Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GPY20_RS07955 Genome accession   NZ_CP046756
Coordinates   228559..229077 (-) Length   172 a.a.
NCBI ID   WP_020330449.1    Uniprot ID   S7I1E9
Organism   Vibrio fluvialis strain 2015AW-0077     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 223559..234077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY20_RS07930 rimM 223681..224235 (-) 555 WP_020330455.1 ribosome maturation factor RimM -
  GPY20_RS07935 rpsP 224263..224511 (-) 249 WP_020330454.1 30S ribosomal protein S16 -
  GPY20_RS07940 ffh 224737..226119 (-) 1383 WP_020330453.1 signal recognition particle protein -
  GPY20_RS07945 - 226332..227126 (+) 795 WP_020330452.1 inner membrane protein YpjD -
  GPY20_RS07950 - 227216..228490 (+) 1275 WP_020330450.1 HlyC/CorC family transporter -
  GPY20_RS07955 luxS 228559..229077 (-) 519 WP_020330449.1 S-ribosylhomocysteine lyase Regulator
  GPY20_RS07960 - 229103..229705 (-) 603 WP_158129748.1 hypothetical protein -
  GPY20_RS07965 gshA 229707..231272 (-) 1566 WP_158129749.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18909.87 Da        Isoelectric Point: 5.5627

>NTDB_id=407220 GPY20_RS07955 WP_020330449.1 228559..229077(-) (luxS) [Vibrio fluvialis strain 2015AW-0077]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSEKGIHTLEHLYAGFMRAHLNGANVEIIDISP
MGCRTGFYMSLIGAPSEEQVAAAWLAAMQDVLKVESQDKIPELNEYQCGTAAMHSLTEAKAIAEKVIAAGIQVNKNDELA
LPESMLKELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=407220 GPY20_RS07955 WP_020330449.1 228559..229077(-) (luxS) [Vibrio fluvialis strain 2015AW-0077]
ATGCCATTATTAGACAGTTTTACCGTCGATCACACTCGCATGAACGCACCGGCTGTGCGTGTTGCGAAAACCATGCAGAC
GCCAAAAGGCGACACTATTACAGTGTTTGACCTGCGTTTTACGATGCCAAACAAAGACATTCTGTCAGAGAAAGGGATTC
ACACTCTTGAGCATCTTTACGCGGGCTTTATGCGCGCGCATCTGAACGGTGCGAACGTGGAAATCATCGATATTTCCCCA
ATGGGCTGCCGTACAGGTTTTTACATGAGCCTGATTGGTGCGCCAAGTGAAGAACAGGTGGCTGCCGCTTGGTTGGCTGC
GATGCAAGATGTTCTGAAGGTGGAAAGTCAGGACAAGATTCCTGAGCTGAACGAATACCAGTGTGGTACGGCAGCGATGC
ACTCGCTGACGGAAGCTAAAGCGATTGCAGAGAAAGTGATTGCCGCAGGCATTCAGGTCAACAAGAATGATGAACTGGCA
CTGCCAGAGTCAATGTTGAAAGAGCTGAAAGTACACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S7I1E9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

91.279

100

0.913

Multiple sequence alignment