Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   GPY20_RS02470 Genome accession   NZ_CP046755
Coordinates   539618..540718 (-) Length   366 a.a.
NCBI ID   WP_158129296.1    Uniprot ID   -
Organism   Vibrio fluvialis strain 2015AW-0077     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 534618..545718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY20_RS02450 - 535157..535531 (+) 375 WP_020433707.1 NirD/YgiW/YdeI family stress tolerance protein -
  GPY20_RS02455 - 535684..536208 (+) 525 WP_047457974.1 hypothetical protein -
  GPY20_RS02460 - 536343..537023 (+) 681 WP_158129294.1 flagellar brake protein -
  GPY20_RS02465 luxQ 537029..539596 (-) 2568 WP_158129295.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ Regulator
  GPY20_RS02470 luxP 539618..540718 (-) 1101 WP_158129296.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  GPY20_RS02475 - 540930..542087 (-) 1158 WP_158129297.1 conjugal transfer protein TraF -
  GPY20_RS02480 - 542201..542482 (-) 282 WP_143682552.1 GIY-YIG nuclease family protein -
  GPY20_RS02485 - 542493..543128 (-) 636 WP_020433719.1 YceH family protein -
  GPY20_RS02490 - 543173..543370 (-) 198 WP_158129298.1 hypothetical protein -
  GPY20_RS02495 - 543560..543877 (+) 318 WP_020329287.1 DUF496 family protein -
  GPY20_RS02500 - 544039..545007 (-) 969 WP_158129299.1 tyrosine-type recombinase/integrase -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 41683.96 Da        Isoelectric Point: 5.1365

>NTDB_id=407214 GPY20_RS02470 WP_158129296.1 539618..540718(-) (luxP) [Vibrio fluvialis strain 2015AW-0077]
MKKTLLLIVCLCFAPLAFAYSSQVLNGYWHYQEFLNANPQQKTLTESLSNAVRQSPARLNVKQSKPVTISVVYPGQQISD
YWIRNIKAFEMRLEELGIEYQINQVFTRPNLDMRQQSLSLMEALKNNTDYLIFTLDTTRHRKFIEHVLSSSPTKLILQNI
TTPVRDWDSRQPMMYVGFDHETGAQQLAQYYREHVPKGSKYSVLYFSEGYVSDARGDTFIQQMEGTGDYQLASSYYTKAT
QESGYEATLNILKNDPDIKFIYACSTDVALGAAQALQEQNREDIQVNGWGGGSAELEALNEGHLDVTVMRINDDTGIAMA
EAIKRDLEGEAVPVVYSGDFEIVTKKEDSSQKIDVFKQRAFRYSDR

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=407214 GPY20_RS02470 WP_158129296.1 539618..540718(-) (luxP) [Vibrio fluvialis strain 2015AW-0077]
ATGAAAAAAACACTACTACTTATAGTTTGCCTCTGTTTTGCTCCTTTAGCCTTTGCGTATTCGTCTCAAGTACTGAATGG
TTACTGGCATTATCAAGAGTTTCTGAATGCAAATCCGCAACAAAAAACGTTGACGGAGTCGCTTTCTAATGCGGTCAGAC
AATCGCCGGCAAGGCTGAATGTCAAACAAAGCAAGCCTGTGACCATTTCGGTTGTCTATCCGGGGCAGCAGATTTCAGAT
TACTGGATTCGCAACATTAAGGCGTTTGAGATGCGTCTGGAAGAGCTGGGGATTGAGTACCAAATCAATCAGGTTTTTAC
GCGGCCTAATCTGGATATGCGTCAGCAAAGCCTTTCTTTGATGGAAGCGCTGAAAAACAACACCGATTATCTGATCTTTA
CTCTCGATACCACCCGTCACCGCAAGTTTATCGAGCATGTTCTCAGTTCCTCGCCAACCAAATTGATTCTTCAGAATATC
ACCACTCCGGTCAGAGACTGGGATAGCCGTCAGCCGATGATGTATGTGGGCTTTGACCACGAAACCGGCGCGCAGCAACT
GGCGCAGTATTATCGCGAACACGTGCCTAAAGGCAGTAAATATTCCGTGCTGTATTTCTCTGAAGGCTACGTCAGCGACG
CACGTGGCGACACTTTTATTCAGCAGATGGAAGGCACTGGTGATTATCAGCTGGCCTCTTCTTACTACACCAAAGCTACT
CAGGAGAGTGGTTACGAAGCAACGCTTAACATTCTGAAAAACGATCCGGACATCAAATTTATTTATGCCTGTTCAACGGA
CGTGGCACTGGGTGCTGCACAAGCGTTGCAAGAGCAGAATCGTGAAGACATTCAGGTCAACGGTTGGGGCGGTGGCTCGG
CAGAGCTTGAAGCGCTGAATGAAGGGCATCTGGATGTGACCGTGATGCGCATCAACGACGATACGGGCATTGCAATGGCG
GAAGCCATCAAACGCGACCTCGAAGGCGAGGCGGTGCCAGTGGTCTATTCCGGCGACTTTGAGATTGTCACCAAAAAAGA
AGATAGTTCGCAAAAAATCGATGTATTTAAGCAACGAGCATTTCGTTATTCCGATCGTTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

70.492

100

0.705

Multiple sequence alignment