Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   GPY21_RS23755 Genome accession   NZ_CP046754
Coordinates   3019730..3020455 (+) Length   241 a.a.
NCBI ID   WP_005459005.1    Uniprot ID   Q87TC3
Organism   Vibrio parahaemolyticus strain 2015AW-0174     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3014730..3025455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY21_RS23740 - 3015834..3018155 (+) 2322 WP_005496736.1 Tex family protein -
  GPY21_RS23745 - 3018290..3018754 (-) 465 WP_005459035.1 hypothetical protein -
  GPY21_RS23750 bioH 3018878..3019645 (-) 768 WP_005489494.1 pimeloyl-ACP methyl ester esterase BioH -
  GPY21_RS23755 comF 3019730..3020455 (+) 726 WP_005459005.1 amidophosphoribosyltransferase Machinery gene
  GPY21_RS23760 nfuA 3020553..3021137 (+) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  GPY21_RS23765 nudE 3021358..3021927 (+) 570 WP_005459019.1 ADP compounds hydrolase NudE -
  GPY21_RS23770 cysQ 3021969..3022796 (+) 828 WP_005496732.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  GPY21_RS23775 - 3023082..3023843 (-) 762 WP_005496730.1 type II secretion system protein N -
  GPY21_RS23780 - 3023845..3024336 (-) 492 WP_005458943.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27770.91 Da        Isoelectric Point: 8.9991

>NTDB_id=407204 GPY21_RS23755 WP_005459005.1 3019730..3020455(+) (comF) [Vibrio parahaemolyticus strain 2015AW-0174]
MLSHHWQNIMHRVLSSQCGLCRFPIQATAQPNALRWCDHCYQYLTPVKRCQRCGLSLKAEEANIESICGECLSEPPPWQR
LFTLGDYDFPLSREVQRFKDHGQTWHVRALTQLLAQRISTPAPLITTVPLHWQRYFYRGFNQSDILARHLAGHLNVRFDN
HVFRRVKHVQSQRGYKKSSREQNLKGAFTLNQPPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=407204 GPY21_RS23755 WP_005459005.1 3019730..3020455(+) (comF) [Vibrio parahaemolyticus strain 2015AW-0174]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCAGGC
TACCGCTCAACCCAATGCGCTGCGTTGGTGTGATCACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGTTGTG
GATTGAGCTTAAAAGCAGAGGAAGCGAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCTCCCCCTTGGCAACGG
CTATTTACCTTGGGAGACTACGATTTTCCGCTGTCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAACATGGCATGT
TCGCGCTTTAACGCAATTGCTTGCCCAGCGCATTTCAACTCCCGCTCCACTTATCACCACAGTGCCATTGCACTGGCAAC
GCTACTTTTATCGAGGCTTTAATCAGAGCGACATACTGGCACGACATTTGGCTGGTCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGTCCAGTCGCAGCGTGGGTACAAGAAATCCAGCCGAGAACAGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCCACCAAAGTATAACCACGTCGCAATCGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGTGCT
GTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(146-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87TC3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

72.199

100

0.722
  comF Vibrio cholerae strain A1552

49.16

98.755

0.485

Multiple sequence alignment