Detailed information NTG0407202

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: GPY21_RS23070
• Genome accession: NZ_CP046754
• Coordinates: 2884441..2885487 (+)
• Length: 348 a.a.
• NCBI ID: WP_254894148.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain 2015AW-0174
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 2879441..2890487

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY21_RS23045	rplC	2880014..2880643 (-)	630	WP_005456132.1	50S ribosomal protein L3	-
GPY21_RS23050	rpsJ	2880658..2880969 (-)	312	WP_004410492.1	30S ribosomal protein S10	-
GPY21_RS23055	rpmE	2881427..2881648 (-)	222	WP_005457203.1	50S ribosomal protein L31	-
GPY21_RS23065	priA	2881943..2884147 (+)	2205	WP_005496931.1	primosomal protein N'	-
GPY21_RS23070	cytR	2884441..2885487 (+)	1047	WP_254894148.1	DNA-binding transcriptional regulator CytR	Regulator
GPY21_RS23075	ftsN	2885663..2886208 (+)	546	WP_005496929.1	cell division protein FtsN	-
GPY21_RS23080	hslV	2886372..2886923 (+)	552	WP_005489705.1	ATP-dependent protease subunit HslV	-
GPY21_RS23085	hslU	2886947..2888278 (+)	1332	WP_005489452.1	HslU--HslV peptidase ATPase subunit	-
GPY21_RS23090	-	2888463..2889380 (+)	918	WP_005457195.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
GPY21_RS23095	rraA	2889457..2889969 (+)	513	WP_005457192.1	ribonuclease E activity regulator RraA	-
GPY21_RS23100	zapB	2890074..2890316 (-)	243	WP_005481417.1	cell division protein ZapB	-

Sequence

Protein

• Length: 348 a.a.
• Molecular weight: 38445.17 Da
• Isoelectric Point: 6.7430

>NTDB_id=407202 GPY21_RS23070 WP_254894148.1 2884441..2885487(+) (cytR) [Vibrio parahaemolyticus strain 2015AW-0174]
MTSSWQKFERLNTMATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVP
DICDPYFSEIIRGIEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEF
APELELPTVHIDNLTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKDPQYSVITEFSFDGGAKA
VRKLLELPEPPTAIFCHCDTMAIGAIQEAKRLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELL
KGHDVHSGSRLLETKLVVRGSAAPPQRA

Nucleotide

• Length: 1047 bp

>NTDB_id=407202 GPY21_RS23070 WP_254894148.1 2884441..2885487(+) (cytR) [Vibrio parahaemolyticus strain 2015AW-0174]
ATAACGTCATCTTGGCAAAAATTTGAGAGGTTAAACACTATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTC
GACAGCTACGGTATCTCGAGCATTAATGAATCCAGAAAAAGTCTCTTCTTCAACAAGAAAAAGAGTCGAAGATGCCGTCC
TTGAAGCGGGCTATTCTCCAAATTCATTAGCGCGTAATCTACGTAGAAACGAATCAAAAACGATTGTTACCATCGTTCCT
GACATCTGTGATCCTTACTTTTCTGAAATCATTCGTGGTATCGAAGACGCAGCTATGGAACATGGCTACCTCGTACTACT
CGGTGACAGCGGCCAGCAGAAAAAGCGTGAAAGCTCGTTTGTGAATCTAGTGTTCACCAAACAAGCCGATGGCATGTTAC
TGCTTGGCACCGACCTGCCATTTGATGTCAGCAAGCCAGAACAGAAAAACCTGCCACCAATGGTCATGGCTTGTGAGTTT
GCGCCAGAGCTAGAATTACCAACCGTGCACATTGACAACCTAACGTCTGCTTTTGAAGCGGTCAATTACCTAACTCAACT
TGGCCATAAACGCATAGCACAAATTTCAGGGCCAGACACAGCGGTATTGTGCCAGTTCCGCCAGCAAGGTTATCAACAAG
CCTTGCGTCGCGCGGGGATCAGTAAAGACCCACAATACAGCGTTATCACTGAGTTTTCTTTTGACGGCGGCGCGAAAGCT
GTACGTAAGTTGCTAGAACTTCCAGAGCCACCAACTGCGATTTTCTGCCACTGTGACACCATGGCAATCGGCGCAATCCA
AGAAGCGAAACGACTCGGTCTGCGCGTTCCGCAAGATCTGTCAGTGGTTGGTTTCGATGATATCAACTTTGCTCAATACT
GCGATCCACCGTTAACAACCATTTCTCAACCTCGTTATGAAATTGGCCGCCAAGCGATGCTTATGATGCTTGAACTCCTG
AAAGGCCATGACGTTCATTCAGGTTCACGCTTACTAGAAACTAAGCTTGTTGTCCGTGGTAGCGCAGCGCCACCGCAACG
CGCCTAA

Domains

Predicted by InterproScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (181-341)

• Bacterial regulatory proteins, lacI family (LacI) (16-61)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	100	100	1
cytR	Vibrio cholerae C6706	90.719	95.977	0.871