Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GPY21_RS11100 Genome accession   NZ_CP046754
Coordinates   470681..471199 (+) Length   172 a.a.
NCBI ID   WP_005462534.1    Uniprot ID   Q87LS4
Organism   Vibrio parahaemolyticus strain 2015AW-0174     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 465681..476199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY21_RS11090 gshA 468416..469984 (+) 1569 WP_005493959.1 glutamate--cysteine ligase -
  GPY21_RS11095 - 470009..470614 (+) 606 WP_015297256.1 hypothetical protein -
  GPY21_RS11100 luxS 470681..471199 (+) 519 WP_005462534.1 S-ribosylhomocysteine lyase Regulator
  GPY21_RS11105 - 471261..472541 (-) 1281 WP_005462557.1 CNNM domain-containing protein -
  GPY21_RS11110 - 472667..473461 (-) 795 WP_005462565.1 inner membrane protein YpjD -
  GPY21_RS11115 ffh 473674..475056 (+) 1383 WP_005462555.1 signal recognition particle protein -
  GPY21_RS11120 rpsP 475266..475514 (+) 249 WP_005379962.1 30S ribosomal protein S16 -
  GPY21_RS11125 rimM 475543..476091 (+) 549 WP_005462552.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19033.73 Da        Isoelectric Point: 4.7134

>NTDB_id=407184 GPY21_RS11100 WP_005462534.1 470681..471199(+) (luxS) [Vibrio parahaemolyticus strain 2015AW-0174]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAQQIAKNILAAGVSVNKNDELA
LPESMLKELRVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=407184 GPY21_RS11100 WP_005462534.1 470681..471199(+) (luxS) [Vibrio parahaemolyticus strain 2015AW-0174]
ATGCCTTTACTCGATAGCTTCACCGTAGACCACACTCGCATGAATGCACCAGCAGTGCGTGTCGCGAAAACCATGCAAAC
TCCAAAAGGAGATACCATTACGGTTTTCGACTTACGCTTCACTGCGCCTAACAAAGACATTCTTTCAGAGAAAGGCATTC
ATACACTAGAGCACTTGTACGCAGGTTTCATGCGCAATCACCTAAATGGTGACAGTGTGGAAATCATTGATATCTCACCG
ATGGGATGTCGCACTGGTTTTTACATGAGTCTCATTGGTACGCCTTCTGAACAGCAAGTCGCAGACGCATGGCTTGCTTC
TATGGAAGATGTGCTAAAAGTGGAAAGCCAGAACAAAATCCCTGAGCTAAATGAGTACCAGTGTGGTACTGCAGCGATGC
ATTCTTTAGAAGAAGCACAGCAAATTGCCAAGAACATTCTAGCCGCAGGTGTGTCTGTTAATAAAAACGACGAGTTGGCT
TTGCCAGAATCAATGCTAAAAGAGCTGCGCGTAGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LS4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.889

99.419

0.884

Multiple sequence alignment