Detailed information NTG0407181

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GPY21_RS10970
• Genome accession: NZ_CP046754
• Coordinates: 448095..449084 (+)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain 2015AW-0174
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 443095..454084

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPY21_RS10935	ftsB	443103..443384 (+)	282	WP_005455577.1	cell division protein FtsB	-
GPY21_RS10940	ispD	443386..444090 (+)	705	WP_005493934.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
GPY21_RS10945	ispF	444108..444584 (+)	477	WP_005493937.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GPY21_RS10950	truD	444631..445674 (+)	1044	WP_005493940.1	tRNA pseudouridine(13) synthase TruD	-
GPY21_RS10955	surE	445674..446450 (+)	777	WP_005493942.1	5'/3'-nucleotidase SurE	-
GPY21_RS10960	-	446450..447076 (+)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
GPY21_RS10965	-	447091..448014 (+)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
GPY21_RS10970	rpoS	448095..449084 (+)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
GPY21_RS10975	mutS	449164..451725 (-)	2562	WP_005493944.1	DNA mismatch repair protein MutS	-
GPY21_RS10980	pncC	451810..452292 (+)	483	WP_005493945.1	nicotinamide-nucleotide amidase	-
GPY21_RS10985	recA	452493..453536 (+)	1044	WP_005478550.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=407181 GPY21_RS10970 WP_005478537.1 448095..449084(+) (rpoS) [Vibrio parahaemolyticus strain 2015AW-0174]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=407181 GPY21_RS10970 WP_005478537.1 448095..449084(+) (rpoS) [Vibrio parahaemolyticus strain 2015AW-0174]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGTAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAACAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACACTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CTCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATTCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTCGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851