Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   GPY21_RS06990 Genome accession   NZ_CP046753
Coordinates   1465579..1467627 (-) Length   682 a.a.
NCBI ID   WP_005498604.1    Uniprot ID   A0A249VZE0
Organism   Vibrio parahaemolyticus strain 2015AW-0174     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1460579..1472627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY21_RS06975 - 1461995..1462732 (+) 738 WP_005454086.1 EAL domain-containing protein -
  GPY21_RS06980 ylqF 1463022..1463966 (+) 945 WP_005454328.1 ribosome biogenesis GTPase YlqF -
  GPY21_RS06985 cqsA 1464320..1465501 (+) 1182 WP_005498606.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  GPY21_RS06990 cqsS 1465579..1467627 (-) 2049 WP_005498604.1 hybrid sensor histidine kinase/response regulator Regulator
  GPY21_RS06995 - 1467947..1468564 (+) 618 WP_005498603.1 HAD family phosphatase -
  GPY21_RS07000 - 1468651..1469199 (-) 549 WP_005481267.1 GNAT family N-acetyltransferase -
  GPY21_RS07005 - 1469471..1470595 (+) 1125 WP_005498602.1 fatty acid desaturase -
  GPY21_RS07010 dcuC 1470949..1472316 (+) 1368 WP_005454288.1 anaerobic C4-dicarboxylate transporter DcuC -

Sequence

Protein


Download         Length: 682 a.a.        Molecular weight: 78297.12 Da        Isoelectric Point: 5.8750

>NTDB_id=407169 GPY21_RS06990 WP_005498604.1 1465579..1467627(-) (cqsS) [Vibrio parahaemolyticus strain 2015AW-0174]
MDSIRKVYEYAEPNLTLVGWMGFIGFPLYYFVWDFMFPQSYENLPLRLFCSALFFGIIFRNRLSSSWRKYVHVYYQITIT
TCLPFFFFYMLLMNDWSNVWVMSFMSAIFLHILLVHVTRVMFAQTFAGIGLATFFAWIAKGFHLDITMDWTHVPIFLFIY
VFGNMFYFRNQVEHEAKVSLAKSFGAGIAHEMRNPLSGLCTSIDVIQSVLPNKKAMGEKDQYVLSGEDVTLLREVSEDAM
NIIHSGNETIDLLLTSIDENRVSRSSFKRYSAQSVVEKAIESFSYKRSTDRFAISFDARSEFDFLGSDTLLKYVMYNLFK
NAFHHRSSDEFHIHVSMQSNDTVNQIVVTDNGSGIAPDVIRHIFQDFYTTGKSGSYGLGLPFCKKVMRSFGGNIKCISQP
GEWSQFTLTFPPITSDTVTEIKDELTKMKSILLVSNQDIIVQKMADISRFMGFDVTVLDVKSVFKKKEYEFEFDLIFVDV
ESLDVLENQLDRIESLLSFTEARVVYLFEHKPAQRAKKVGHDPIWVETQAWLLNTKATIERLLYDSTYISSTLPSAPLDK
SIKRTIMVVDDNESLRKFTAMLLEKQGFEVVQKEDGQQALDTLEKENIDLILMDIEMPIMDGVEASRRIRNSEKPYATVP
IIAHTGDSSPVTLDKIGSSGMSDFIVKPADKNRLFDKIANWI

Nucleotide


Download         Length: 2049 bp        

>NTDB_id=407169 GPY21_RS06990 WP_005498604.1 1465579..1467627(-) (cqsS) [Vibrio parahaemolyticus strain 2015AW-0174]
ATGGATTCGATACGTAAGGTATATGAGTACGCAGAGCCCAATTTAACATTAGTTGGTTGGATGGGATTTATTGGCTTCCC
GCTCTACTACTTCGTTTGGGACTTCATGTTCCCGCAATCCTATGAAAACTTGCCGCTACGTTTGTTCTGTTCCGCACTGT
TTTTTGGCATCATTTTTCGTAACCGTTTGTCGTCATCATGGCGAAAGTACGTGCACGTCTATTATCAAATAACGATTACG
ACCTGTTTACCTTTCTTCTTTTTTTATATGTTACTCATGAATGATTGGTCCAATGTTTGGGTGATGTCATTCATGTCGGC
TATTTTCCTGCATATTTTGTTGGTTCATGTCACAAGGGTCATGTTTGCTCAGACGTTCGCTGGTATTGGTCTAGCGACGT
TTTTTGCGTGGATCGCGAAAGGCTTTCATCTCGATATCACAATGGATTGGACGCATGTGCCGATATTTTTGTTTATTTAT
GTGTTTGGCAACATGTTCTATTTCCGAAATCAGGTCGAGCATGAAGCAAAAGTATCGCTCGCTAAGTCGTTTGGCGCTGG
TATTGCTCATGAAATGCGTAATCCACTCAGTGGCTTATGTACGTCGATAGATGTTATTCAGTCTGTCTTGCCTAACAAAA
AGGCGATGGGCGAAAAAGATCAGTATGTCTTGAGTGGTGAAGACGTAACCTTGCTCCGTGAAGTGAGCGAAGATGCGATG
AACATTATTCATTCAGGCAACGAGACAATCGATTTATTGCTCACATCGATTGATGAAAACCGCGTATCTCGCTCTTCCTT
CAAAAGATATTCTGCTCAATCGGTGGTTGAAAAAGCCATTGAGAGTTTCAGTTATAAACGTTCGACAGACAGGTTCGCGA
TCTCATTCGATGCAAGAAGTGAGTTTGATTTTTTGGGTAGCGATACATTGTTAAAGTACGTCATGTATAACTTGTTTAAG
AACGCATTTCATCATCGCAGTTCAGACGAGTTTCACATTCATGTGAGTATGCAAAGTAATGACACGGTCAACCAAATTGT
AGTGACGGACAACGGCTCAGGTATCGCGCCAGATGTAATTCGACATATCTTTCAGGACTTCTATACCACAGGTAAATCGG
GCAGTTATGGCCTTGGACTACCGTTCTGTAAGAAAGTCATGCGTTCATTTGGCGGTAATATTAAGTGCATTTCCCAGCCG
GGAGAGTGGTCACAGTTTACGTTGACTTTTCCGCCTATCACATCAGATACGGTAACGGAAATTAAAGACGAACTGACCAA
AATGAAATCAATTTTATTGGTCAGTAATCAAGACATTATCGTGCAAAAAATGGCAGATATTAGTCGCTTCATGGGATTTG
ATGTCACCGTTTTAGATGTAAAAAGCGTCTTTAAAAAGAAAGAATACGAGTTTGAATTTGACCTGATATTTGTCGATGTG
GAAAGCCTTGATGTTTTAGAAAACCAATTAGACAGAATCGAATCGTTACTTTCATTTACTGAAGCGCGTGTGGTGTATCT
TTTTGAGCACAAACCTGCGCAACGAGCTAAAAAAGTTGGCCATGACCCGATTTGGGTAGAGACTCAAGCGTGGCTGCTAA
ACACCAAAGCTACGATTGAACGTTTGCTTTACGATTCCACTTATATCTCGTCAACACTGCCATCTGCGCCTTTAGATAAA
TCCATCAAGCGAACCATCATGGTTGTGGATGATAACGAGTCTCTGCGTAAGTTTACGGCGATGTTACTAGAGAAGCAGGG
ATTTGAAGTGGTACAAAAGGAAGATGGTCAGCAAGCATTGGACACTCTTGAAAAAGAAAATATCGATCTGATTTTAATGG
ATATTGAGATGCCAATCATGGATGGAGTAGAAGCGTCGCGACGTATCCGTAACTCAGAAAAGCCGTATGCAACTGTGCCG
ATTATTGCGCATACGGGAGACAGTTCTCCTGTGACGCTAGATAAAATTGGCTCATCCGGCATGTCCGACTTTATCGTGAA
ACCTGCAGATAAGAATCGCCTTTTCGATAAAATTGCTAACTGGATTTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(309-412)

Response regulator receiver domain (Response_reg)

(566-678)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A249VZE0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

48.98

100

0.493

Multiple sequence alignment