Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   GPX93_RS17580 Genome accession   NZ_CP046750
Coordinates   853312..854406 (+) Length   364 a.a.
NCBI ID   WP_123162172.1    Uniprot ID   -
Organism   Vibrio cholerae strain 2015V-1118     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 848312..859406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX93_RS17545 - 849455..849706 (-) 252 WP_001882582.1 YgjV family protein -
  GPX93_RS17555 - 850119..850439 (-) 321 WP_001089529.1 DUF496 family protein -
  GPX93_RS17560 - 850627..850824 (+) 198 WP_001246071.1 hypothetical protein -
  GPX93_RS17565 - 850866..851516 (+) 651 WP_001025631.1 YceH family protein -
  GPX93_RS17570 - 851533..851838 (+) 306 WP_123162171.1 GIY-YIG nuclease family protein -
  GPX93_RS17575 traF 851940..853100 (+) 1161 WP_001025858.1 conjugal transfer protein TraF -
  GPX93_RS17580 luxP 853312..854406 (+) 1095 WP_123162172.1 substrate-binding domain-containing protein Regulator
  GPX93_RS17585 luxQ 854424..856997 (+) 2574 WP_123162173.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ Regulator
  GPX93_RS17590 - 856989..857654 (-) 666 WP_000268198.1 flagellar brake protein -
  GPX93_RS17595 - 857898..858416 (-) 519 WP_000914961.1 hypothetical protein -
  GPX93_RS17605 - 858653..859051 (-) 399 WP_000831416.1 YgiW/YdeI family stress tolerance OB fold protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 41199.84 Da        Isoelectric Point: 6.5074

>NTDB_id=407124 GPX93_RS17580 WP_123162172.1 853312..854406(+) (luxP) [Vibrio cholerae strain 2015V-1118]
MKRKLISPLFLMAALFSSTGQADSLKGYWHYDEFLAEFPEQRPISELFAQTVRDKPSALTVAQKQPVIISVVYPGQQISD
YWVRNIKAFEKRMDALGIRYQINQVFTRPNLDTRQQSVSLMEALKNKSDYLIFTLDTTRHRKFIEHVLHSSETKLILQNI
TTPVKDWQGKQPMMYIGFDHEYGAQLLAQYYQAHAPKKPYSVLYFSEGYISEARGDTFIQDMNEAHHFPLASSYYTKATE
QSGYEATLNIVKNNPEIGFIYACATDVALGAAQALKELNRQDILVNGWGGGSAELEALAKGELDVTVMRMNDDTGVAMAE
AIKWDLEGKAVPLVYSGDFEVATKQDSAARIAELKARAFRYSDR

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=407124 GPX93_RS17580 WP_123162172.1 853312..854406(+) (luxP) [Vibrio cholerae strain 2015V-1118]
ATGAAAAGAAAGCTAATATCCCCGCTGTTTCTGATGGCAGCGCTCTTCAGCTCAACTGGTCAAGCCGATTCATTAAAAGG
CTATTGGCATTATGATGAATTCCTTGCTGAGTTCCCTGAACAGCGGCCAATTTCCGAGCTTTTTGCTCAAACAGTTCGTG
ATAAACCGAGTGCGTTGACGGTGGCGCAAAAACAACCCGTTATTATTTCAGTGGTCTATCCCGGACAGCAAATTTCCGAC
TATTGGGTTCGCAATATCAAAGCGTTTGAAAAGCGAATGGACGCTTTAGGGATTCGCTATCAAATCAATCAGGTGTTTAC
TCGCCCAAATCTTGATACTCGCCAGCAGAGTGTTTCCTTGATGGAAGCGCTGAAAAATAAGAGCGATTATCTGATTTTTA
CCTTAGATACCACCCGTCACCGCAAATTCATTGAGCATGTGCTGCACTCCTCCGAAACGAAACTGATTTTGCAAAACATC
ACGACGCCAGTCAAAGATTGGCAAGGCAAGCAGCCCATGATGTACATCGGTTTTGATCATGAGTACGGCGCGCAATTATT
GGCGCAATATTACCAAGCACATGCCCCGAAAAAGCCGTACTCAGTACTTTATTTTTCCGAGGGGTATATCAGTGAAGCGC
GGGGAGATACCTTCATTCAAGATATGAACGAGGCGCACCATTTTCCGTTGGCTTCTTCCTATTACACCAAGGCAACCGAA
CAAAGTGGCTATGAAGCGACCCTAAACATCGTCAAGAATAATCCAGAAATTGGTTTTATTTACGCCTGTGCGACGGACGT
GGCTTTGGGAGCTGCGCAGGCACTGAAAGAGCTGAATCGACAAGATATTCTGGTCAATGGTTGGGGAGGCGGCTCGGCAG
AGCTTGAAGCGCTTGCCAAAGGAGAATTGGATGTCACTGTGATGCGTATGAATGACGATACGGGTGTGGCGATGGCCGAA
GCGATTAAATGGGATTTGGAAGGGAAAGCCGTACCCTTAGTCTATTCAGGCGATTTTGAAGTGGCCACCAAACAAGATTC
AGCAGCACGTATTGCAGAACTGAAAGCTCGGGCTTTCCGTTATTCGGATCGTTAG

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

98.352

100

0.984

Multiple sequence alignment