Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   GPX93_RS12090 Genome accession   NZ_CP046749
Coordinates   2648629..2649636 (-) Length   335 a.a.
NCBI ID   WP_000224452.1    Uniprot ID   A0A085RG68
Organism   Vibrio cholerae strain 2015V-1118     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2643629..2654636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX93_RS12065 rraA 2644204..2644719 (-) 516 WP_000456236.1 ribonuclease E activity regulator RraA -
  GPX93_RS12070 - 2644794..2645711 (-) 918 WP_123163020.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  GPX93_RS12075 hslU 2645815..2647146 (-) 1332 WP_123163021.1 HslU--HslV peptidase ATPase subunit -
  GPX93_RS12080 hslV 2647212..2647769 (-) 558 WP_033931421.1 ATP-dependent protease subunit HslV -
  GPX93_RS12085 - 2647906..2648457 (-) 552 WP_057551173.1 SPOR domain-containing protein -
  GPX93_RS12090 cytR 2648629..2649636 (-) 1008 WP_000224452.1 DNA-binding transcriptional regulator CytR Regulator
  GPX93_RS12095 priA 2649942..2652146 (-) 2205 WP_123163022.1 primosomal protein N' -
  GPX93_RS12100 rpmE 2652401..2652619 (+) 219 WP_000643446.1 50S ribosomal protein L31 -
  GPX93_RS12105 - 2652927..2654204 (+) 1278 WP_123163023.1 malic enzyme-like NAD(P)-binding protein -
  GPX93_RS12110 metJ 2654315..2654632 (-) 318 WP_000796267.1 met regulon transcriptional regulator MetJ -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 37018.59 Da        Isoelectric Point: 7.0759

>NTDB_id=407117 GPX93_RS12090 WP_000224452.1 2648629..2649636(-) (cytR) [Vibrio cholerae strain 2015V-1118]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPSKK

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=407117 GPX93_RS12090 WP_000224452.1 2648629..2649636(-) (cytR) [Vibrio cholerae strain 2015V-1118]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGAGTTTCAACCGCGACCGTGTCTCGTGCGTTGATGAATCCAGAGAA
AGTCTCGTCGTCCACTCGCAAACGAGTGGAAGAGGCCGTGCTGGAAGCGGGTTACTCACCCAATTCTTTGGCGCGCAATT
TGCGCCGTAATGAATCGAAAACCATCGTTGCTATCGTGCCAGATATCTGTGATCCCTACTTTTCTGAGATCATTCGCGGT
ATTGAAGATGCCGCGATGGAGCACGGTTATCTGGTGCTGTTGGGGGATAGTGGTCAACAGAAGCGTCGGGAGAACTCGTT
CGTTAATCTGGTGTTTACCAAACAGGCAGACGGTATGTTGCTGCTGGGGACAGATTTGCCGTTTGATGTGAGTAAACCTG
AGCAGAAAAACCTACCGCCTATGGTGATGGCGTGTGAATTTGCGCCAGAGCTGGAATTGCCAACGGTACACATTGATAAC
CTGACCTCTGCATTTGAGGCGGTAAACTATCTCACTCAGCTTGGGCACAAACGGATTGCGCAGATCTCCGGTCCACAACA
TGCTGCGCTGTGCCAATTCCGTCATCAAGGCTATCAACAGGCGCTGCGTCGTGCTGGTATCACCATGAACCCGACTTACT
GCACTTTTGGCGATTTCACTTTTGAAGCCGGGGCAAAAGCGGTGCGTCAGCTGTTGGCATTGCCTGAGCAGCCGACCGCG
ATTTTCTGTCATAACGATACGATGGCGATTGGCGCAATTCAGGAAGCGAAGCGACTTGGCTTGCGCGTACCGCAAGATCT
TTCCGTGGTCGGTTTTGACGATATTCAGTTTGCCCAGTACTGCGATCCCCCATTAACCACGATTTCGCAGCCGCGTTATG
AGATTGGCCGTCAAGCCATGCTGATGATGCTCGAATTATTGCGCGGACATGATGTGCGTGCTGGATCGCGTCTTTTGGAG
ACCAAGTTGGTCGTGCGTGAGAGTGCTGCGCCGCCAAGCAAGAAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085RG68

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

100

100

1
  cytR Vibrio parahaemolyticus RIMD 2210633

90.719

99.701

0.904

Multiple sequence alignment