Detailed information NTG0407099

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: GPX93_RS05220
• Genome accession: NZ_CP046749
• Coordinates: 1120195..1121619 (-)
• Length: 474 a.a.
• NCBI ID: WP_123162592.1
• Uniprot ID: -
• Organism: Vibrio cholerae strain 2015V-1118
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1115195..1126619

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPX93_RS05195	purT	1115704..1116879 (-)	1176	WP_184482706.1	phosphoribosylglycinamide formyltransferase 2	-
GPX93_RS05200	-	1117033..1117908 (-)	876	WP_123162591.1	AEC family transporter	-
GPX93_RS05205	cdd	1118067..1118954 (-)	888	WP_071180132.1	cytidine deaminase	-
GPX93_RS05210	-	1119124..1119798 (-)	675	WP_000266245.1	LrgB family protein	-
GPX93_RS05215	-	1119789..1120163 (-)	375	WP_001881007.1	CidA/LrgA family protein	-
GPX93_RS05220	sbcB	1120195..1121619 (-)	1425	WP_123162592.1	exodeoxyribonuclease I	Machinery gene
GPX93_RS05225	-	1121763..1123136 (-)	1374	WP_000117953.1	L-cystine transporter	-
GPX93_RS05230	msrB	1123482..1123928 (+)	447	WP_000935885.1	peptide-methionine (R)-S-oxide reductase MsrB	-
GPX93_RS05235	cobT	1124539..1125564 (+)	1026	WP_184482709.1	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	-
GPX93_RS05240	-	1125564..1126349 (+)	786	WP_123162594.1	adenosylcobinamide-GDP ribazoletransferase	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54514.88 Da
• Isoelectric Point: 5.9825

>NTDB_id=407099 GPX93_RS05220 WP_123162592.1 1120195..1121619(-) (sbcB) [Vibrio cholerae strain 2015V-1118]
MQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGITPQKANSQGLAEP
EFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHY
TSWIVPIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAQ
KIGIEREQCLAHLNVIRQHPEIREKLVTVFSQEREFNQESDVDSQLYAGFFSPADRAAMEIIRTTAPENLGSLAIQVADK
RIEPLLFRYRARHYPHTLTDAEQRRWAAHCRDYFERNLEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLAC

Nucleotide

• Length: 1425 bp

>NTDB_id=407099 GPX93_RS05220 WP_123162592.1 1120195..1121619(-) (sbcB) [Vibrio cholerae strain 2015V-1118]
ATGCAGCAAGAACACCAGCCCACATTCTTCTTTTTCGACTACGAGACTTGGGGGGTCAATCCCGCCAAAGATCGTCCTAG
TCAGTTTGCGGGTGTGCGTACCGATATGGACTTCAACATCATCGGCGAGCCTTTGGTAATTTACTGTCAGCTGCCCAACG
ACTATTTACCTGCTCCTGAAGCCGCATTGATCACAGGGATCACTCCTCAAAAAGCCAATAGCCAAGGTCTCGCGGAGCCC
GAATTTATCGCGCGTATTCATGCTGAGCTCTCCACACCAAACACCACTAGCCTTGGCTATAACAGCATACGTTTTGATGA
TGAAGTGACGCGCTACACCTGCTATCGCAACTTTATCGACCCCTATGCTTGGAGCTGGCAACACGGCAATTCCCGTTGGG
ATCTGCTGGATGTGCTTCGCGCGTGTCATGCTTTGCGTCCTGAAGGTATTGAGTGGCCGGAAAATGATGACGGCTTTACC
AGCTTTAAACTGGAACATCTTTCTGTTGCCAACGGCATTGAGCACAGCAACGCGCACGATGCGATGGCCGATGTGATTGC
CACCATTGAACTGGCGAAAAAAGTCAAAGCCGCGCAGCCGAAATTGTTCGACTACTTCTTCACTATGCGCCACAAACGCA
AACTGACAGAACTGATTGATATTGTGAACCAAACTCCGCTGATGCATGTTTCTGGCATGCTTGGGCGTGAGCGCCACTAC
ACCAGCTGGATTGTGCCGATTGCTTGGCATCCGACCAATCAAAATGCGGTGATTGTGGTGGATTTGGGTAAAGACCCTCA
GCCGCTGCTGGAGCTCGATGCCGAAACGCTGCAAGCACGTCTCTATACGCGGTATGAAGACCTAGCGCCGGATGAGCTAC
CAGTACCCGTGAAATTGGTGCATCTCAATAAATGCCCTATTCTGGCTCCGGCCAAAACCTTGACCGCAGAAAATGCACAA
AAGATTGGTATTGAGCGCGAACAGTGTCTCGCGCACTTGAATGTGATTCGTCAACACCCCGAGATTCGTGAAAAGCTGGT
GACGGTATTTAGCCAAGAGCGCGAATTTAACCAAGAGAGTGATGTGGATAGCCAACTCTATGCCGGTTTTTTCTCCCCAG
CCGATCGTGCGGCAATGGAGATCATCCGCACCACTGCACCGGAGAATCTGGGCAGCTTAGCGATACAGGTGGCCGATAAG
CGCATTGAACCACTGCTGTTTCGTTATCGTGCGCGCCATTATCCACACACCTTAACCGATGCCGAGCAACGCCGCTGGGC
AGCGCATTGTCGTGACTATTTCGAGCGAAATCTAGAAGGTTATATGTTGAATTTGGAAAATCTGGTGCATGAACATCAAG
CTGATCCAAAGAAAATGGCGATTTTAAAATCCGTCTACCATTACGTGGAAAAACTCGCTTGCTAA

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

• Exonuclease (RNase_T) (11-191)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	98.945	100	0.989