Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GPX93_RS02025 Genome accession   NZ_CP046749
Coordinates   410929..411447 (+) Length   172 a.a.
NCBI ID   WP_001130227.1    Uniprot ID   -
Organism   Vibrio cholerae strain 2015V-1118     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 405929..416447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX93_RS02015 - 406339..409194 (+) 2856 WP_184482587.1 pitrilysin family protein -
  GPX93_RS02020 gshA 409306..410880 (+) 1575 WP_002156718.1 glutamate--cysteine ligase -
  GPX93_RS02025 luxS 410929..411447 (+) 519 WP_001130227.1 S-ribosylhomocysteine lyase Regulator
  GPX93_RS02030 - 411517..412797 (-) 1281 WP_000340990.1 HlyC/CorC family transporter -
  GPX93_RS02035 - 412880..413674 (-) 795 WP_000369278.1 inner membrane protein YpjD -
  GPX93_RS02040 ffh 413887..415272 (+) 1386 WP_123162386.1 signal recognition particle protein -
  GPX93_RS02045 rpsP 415508..415756 (+) 249 WP_000256449.1 30S ribosomal protein S16 -
  GPX93_RS02050 rimM 415784..416338 (+) 555 WP_000061906.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19080.90 Da        Isoelectric Point: 5.2199

>NTDB_id=407091 GPX93_RS02025 WP_001130227.1 410929..411447(+) (luxS) [Vibrio cholerae strain 2015V-1118]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSERGIHTLEHLYAGFMRNHLNGSQVEIIDISP
MGCRTGFYMSLIGAPTEQQVAQAWLAAMQDVLKVESQEQIPELNEYQCGTAAMHSLEEAKAIAKNVIAAGISVNRNDELA
LPESMLNELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=407091 GPX93_RS02025 WP_001130227.1 410929..411447(+) (luxS) [Vibrio cholerae strain 2015V-1118]
ATGCCATTATTAGACAGTTTTACCGTCGATCATACCCGTATGAATGCACCGGCGGTGCGTGTTGCCAAAACCATGCAAAC
CCCAAAAGGGGATACGATTACCGTATTTGATTTGCGTTTTACTATGCCAAACAAAGATATCTTGTCTGAGCGCGGTATCC
ATACTCTAGAGCATCTCTACGCGGGCTTTATGCGTAATCACCTTAACGGCAGCCAAGTGGAGATCATCGATATTTCACCA
ATGGGTTGCCGTACAGGTTTCTACATGAGCTTGATTGGTGCGCCGACAGAACAGCAAGTGGCACAAGCATGGCTAGCCGC
AATGCAAGATGTGTTGAAAGTCGAAAGCCAAGAGCAAATTCCTGAGCTGAATGAGTACCAGTGCGGCACTGCGGCGATGC
ACTCGCTCGAAGAAGCCAAAGCGATTGCGAAAAACGTGATTGCGGCAGGTATCTCGGTTAACCGTAACGATGAGTTGGCG
CTGCCCGAATCTATGCTCAATGAGCTGAAGGTTCACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

100

100

1

Multiple sequence alignment