Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   GPX93_RS01885 Genome accession   NZ_CP046749
Coordinates   384084..385091 (+) Length   335 a.a.
NCBI ID   WP_000116735.1    Uniprot ID   A0A085SEX1
Organism   Vibrio cholerae strain 2015V-1118     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 379084..390091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX93_RS01850 ftsB 379135..379419 (+) 285 WP_184482583.1 cell division protein FtsB -
  GPX93_RS01855 ispD 379416..380114 (+) 699 WP_001061954.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  GPX93_RS01860 ispF 380111..380587 (+) 477 WP_000619207.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  GPX93_RS01865 truD 380617..381702 (+) 1086 WP_123162378.1 tRNA pseudouridine(13) synthase TruD -
  GPX93_RS01870 surE 381704..382456 (+) 753 WP_184482585.1 5'/3'-nucleotidase SurE -
  GPX93_RS01875 - 382449..383075 (+) 627 WP_000002982.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  GPX93_RS01880 nlpD 383075..384010 (+) 936 WP_118089416.1 murein hydrolase activator NlpD -
  GPX93_RS01885 rpoS 384084..385091 (+) 1008 WP_000116735.1 RNA polymerase sigma factor RpoS Regulator
  GPX93_RS01890 mutS 385187..387775 (-) 2589 WP_001893275.1 DNA mismatch repair protein MutS -
  GPX93_RS01895 cysM 388043..388930 (-) 888 WP_001279365.1 cysteine synthase CysM -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 38504.37 Da        Isoelectric Point: 4.3648

>NTDB_id=407088 GPX93_RS01885 WP_000116735.1 384084..385091(+) (rpoS) [Vibrio cholerae strain 2015V-1118]
MSVSNTVTKVEEFDFEDEALEVLETDAELASDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=407088 GPX93_RS01885 WP_000116735.1 384084..385091(+) (rpoS) [Vibrio cholerae strain 2015V-1118]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAACTCGCCAGTGATGAAGAATTAGTCGCTGTTGAAGGGGCAAGTGAAGATGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGCCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTTTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACGCCAGAAGAAATTGCTCTTGAGTTAGACCGACCTGTCGATGATGTGACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGTGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCACACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCTCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATTCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCGCTGTTTAACGTCGAATACGACAACTAA

Domains

Predicted by InterproScan.

Sigma-70 region 3 (Sigma70_r3)

(175-249)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(57-90)

Sigma-70 region 2 (Sigma70_r2)

(95-164)

Sigma-70, region 4 (Sigma70_r4)

(263-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085SEX1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

99.701

100

0.997

Multiple sequence alignment