Detailed information NTG0407076

Bioinformatically predicted

Overview

• Name: comR
• Type: Regulator
• Locus tag: SSU1300283_RS00355
• Genome accession: NZ_CP058741
• Coordinates: 59531..60448 (+)
• Length: 305 a.a.
• NCBI ID: WP_002935296.1
• Uniprot ID: -
• Organism: Streptococcus suis strain 13-00283-02
• Function: activate transcription of comX (predicted from homology) Competence regulation

Genomic Context

Location: 54531..65448

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SSU1300283_RS00330 (SSU1300283_00068)	-	54615..56327 (+)	1713	WP_002935303.1	ABC transporter ATP-binding protein	-
SSU1300283_RS00335 (SSU1300283_00069)	-	56429..56602 (+)	174	WP_014636741.1	hypothetical protein	-
SSU1300283_RS00340 (SSU1300283_00070)	ruvB	56897..57898 (+)	1002	WP_002935300.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
SSU1300283_RS00345 (SSU1300283_00071)	-	57898..58644 (+)	747	WP_002935299.1	GNAT family N-acetyltransferase	-
SSU1300283_RS00350 (SSU1300283_00072)	-	58646..59284 (+)	639	WP_002935298.1	HAD-IA family hydrolase	-
SSU1300283_RS00355 (SSU1300283_00073)	comR	59531..60448 (+)	918	WP_002935296.1	helix-turn-helix domain-containing protein	Regulator
SSU1300283_RS00360 (SSU1300283_00074)	-	60857..62059 (-)	1203	WP_002935295.1	IS110-like element ISSsu7 family transposase	-
SSU1300283_RS00365 (SSU1300283_00075)	yfmF	62482..63735 (+)	1254	WP_009911054.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
SSU1300283_RS00370 (SSU1300283_00076)	yfmH	63732..65015 (+)	1284	WP_002939071.1	EF-P 5-aminopentanol modification-associated protein YfmH	-

Sequence

Protein

• Length: 305 a.a.
• Molecular weight: 36252.32 Da
• Isoelectric Point: 4.6744

>NTDB_id=407076 SSU1300283_RS00355 WP_002935296.1 59531..60448(+) (comR) [Streptococcus suis strain 13-00283-02]
MNDKEFGQRVRQLRESASMTREQFCDDELELSVRQLTRIEAGASKPTFSKIQYIATRLGMGLYELMPDYVSLPERYSKLK
FDVLRTPTYGNEDLAEKRDAMMTEIYDDYYDELPEEEKIVVDTLCSLFDVLDTDSQEYGKEILDDYLHQSYHRSKLSIND
LMILRLFIEHCQLEDLSVGTSNYALFTDLIEKLPQSIYDVHSESLFIVRDLFLAIVRILFSKELYNHIPVYIEKIENIME
LSQDFQKKPILNLVKWKYELKVQHNHEIAERYYNEAITFASLLNQFHLKEKLQMEWEKDTQSLKR

Nucleotide

• Length: 918 bp

>NTDB_id=407076 SSU1300283_RS00355 WP_002935296.1 59531..60448(+) (comR) [Streptococcus suis strain 13-00283-02]
ATGAACGATAAGGAGTTTGGACAGCGTGTGCGTCAATTACGAGAATCTGCTAGTATGACACGTGAACAGTTTTGTGACGA
TGAACTGGAACTCTCTGTGCGCCAATTAACTCGTATTGAAGCAGGTGCTTCCAAGCCGACTTTTTCAAAGATTCAGTATA
TTGCAACTCGTTTAGGTATGGGACTTTACGAGCTTATGCCAGATTATGTATCTTTACCCGAAAGATATTCCAAGCTGAAG
TTTGATGTGCTTCGCACCCCAACTTATGGTAATGAAGATTTGGCGGAAAAGCGAGATGCCATGATGACAGAAATCTATGA
CGATTATTATGATGAATTGCCTGAGGAGGAGAAAATAGTTGTAGACACCCTATGTTCCCTATTTGATGTATTGGATACAG
ATAGCCAGGAATACGGTAAAGAAATTCTTGATGATTATTTACATCAAAGCTATCACCGTTCCAAACTATCTATAAACGAT
TTAATGATTTTGCGATTATTTATTGAACATTGTCAGTTGGAGGATTTATCTGTTGGAACTTCCAATTATGCTTTATTTAC
AGATTTGATAGAGAAATTGCCTCAATCAATCTATGATGTACATTCGGAATCCTTATTCATTGTCCGCGATTTATTTCTAG
CTATTGTTCGTATTTTATTTTCGAAGGAGTTGTATAATCATATTCCAGTCTATATAGAAAAAATAGAAAACATCATGGAA
TTATCACAAGATTTTCAGAAGAAGCCAATTCTAAATCTTGTGAAATGGAAATATGAATTAAAGGTACAACATAATCATGA
AATTGCTGAGAGGTACTATAATGAAGCGATTACATTTGCCAGCCTACTAAATCAATTTCACTTGAAAGAAAAACTGCAAA
TGGAATGGGAAAAAGATACGCAGAGTCTAAAAAGATGA

Domains

Predicted by InterProScan.

• Helix-turn-helix domain (HTH_31) (5-60)

• ComR tetratricopeptide (ComR_TPR) (73-296)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comR	Streptococcus suis D9	100	100	1
comR	Streptococcus suis P1/7	62.126	98.689	0.613
comR	Streptococcus suis 05ZYH33	62.126	98.689	0.613
comR	Streptococcus mutans UA159	37	98.361	0.364