Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   GPY00_RS15605 Genome accession   NZ_CP046748
Coordinates   333356..334450 (+) Length   364 a.a.
NCBI ID   WP_158128727.1    Uniprot ID   -
Organism   Vibrio cholerae strain 3541-04     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 328356..339450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY00_RS15570 - 329516..329767 (-) 252 WP_001882582.1 YgjV family protein -
  GPY00_RS15580 - 330180..330500 (-) 321 WP_001089529.1 DUF496 family protein -
  GPY00_RS15585 - 330688..330885 (+) 198 WP_001246071.1 hypothetical protein -
  GPY00_RS15590 - 330927..331577 (+) 651 WP_158128726.1 YceH family protein -
  GPY00_RS15595 - 331577..331882 (+) 306 WP_000448828.1 GIY-YIG nuclease family protein -
  GPY00_RS15600 traF 331984..333144 (+) 1161 WP_033928042.1 conjugal transfer protein TraF -
  GPY00_RS15605 luxP 333356..334450 (+) 1095 WP_158128727.1 substrate-binding domain-containing protein Regulator
  GPY00_RS15610 luxQ 334468..337041 (+) 2574 WP_114728679.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ Regulator
  GPY00_RS15615 - 337033..337698 (-) 666 WP_000268198.1 flagellar brake protein -
  GPY00_RS15620 - 337942..338460 (-) 519 WP_000914961.1 hypothetical protein -
  GPY00_RS15630 - 338699..339097 (-) 399 WP_000831416.1 YgiW/YdeI family stress tolerance OB fold protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 41149.89 Da        Isoelectric Point: 6.9216

>NTDB_id=407076 GPY00_RS15605 WP_158128727.1 333356..334450(+) (luxP) [Vibrio cholerae strain 3541-04]
MKRKLISPLFLIAALFSSTAQAASLKGYWHYDEFLAEFPEQRPISELFAQTVRDKPSALTVAQKQPVIISVVYPGQQISD
YWVRNIKAFEKRMDALGIRYQINQVFTRPNLDTRQQSVSLMEALKNKSDYLIFTLDTTRHRKFIEHVLHSSETKLILQNI
TTPVKDWQGKQPMMYIGFDHEYGAQLLAQYYQAHAPKKPYSVLYFSEGYISEARGDTFIQDMNAVHHFPLASSYYTKATE
QSGYEATLNIVKNNPEIGFIYACATDVALGAAQALKELNRQDILVNGWGGGSAELEALAKGELDVTVMRMNDDTGVAMAE
AIKWDLEGKAVPLVYSGDFEVVTKQDSAARIAELKARAFRYSDR

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=407076 GPY00_RS15605 WP_158128727.1 333356..334450(+) (luxP) [Vibrio cholerae strain 3541-04]
ATGAAAAGAAAGCTAATATCTCCGCTGTTTCTGATAGCAGCACTCTTCAGCTCAACTGCTCAAGCCGCTTCATTAAAAGG
CTATTGGCATTATGATGAATTTCTTGCTGAGTTCCCTGAACAGCGGCCAATTTCCGAGCTTTTTGCTCAAACAGTTCGTG
ATAAACCGAGCGCGTTGACGGTGGCGCAAAAACAACCCGTCATTATTTCAGTGGTCTATCCCGGACAGCAAATTTCCGAC
TATTGGGTTCGAAACATCAAAGCGTTTGAAAAGCGAATGGACGCTTTAGGGATTCGCTATCAAATCAATCAGGTGTTTAC
TCGCCCGAATCTTGATACTCGCCAGCAGAGTGTTTCCTTGATGGAAGCGCTGAAAAATAAGAGCGACTATCTGATTTTTA
CCTTAGATACCACCCGTCACCGCAAATTCATTGAGCATGTGCTGCACTCATCCGAAACGAAACTGATTTTGCAAAACATC
ACGACGCCAGTCAAAGATTGGCAAGGCAAGCAGCCCATGATGTACATCGGTTTTGATCATGAGTACGGTGCGCAATTATT
GGCGCAATATTACCAAGCACATGCCCCGAAAAAGCCGTACTCAGTACTTTATTTTTCCGAGGGGTATATCAGTGAAGCGC
GGGGAGATACCTTCATTCAAGATATGAACGCGGTGCACCATTTTCCGTTGGCTTCTTCCTATTACACCAAGGCAACCGAA
CAAAGTGGCTATGAAGCGACTCTAAACATCGTCAAGAATAATCCAGAAATTGGCTTTATTTACGCCTGTGCGACGGACGT
CGCTTTGGGAGCTGCGCAGGCACTGAAAGAGCTGAATCGACAAGATATTCTGGTCAATGGTTGGGGAGGCGGCTCGGCAG
AGCTTGAAGCGCTTGCCAAAGGAGAATTGGATGTCACTGTGATGCGAATGAATGACGATACGGGTGTGGCGATGGCCGAA
GCGATTAAATGGGATTTGGAAGGGAAAGCCGTACCTTTGGTCTATTCAGGCGATTTTGAAGTGGTCACCAAACAAGATTC
AGCAGCACGTATTGCAGAACTGAAAGCTCGGGCTTTCCGTTATTCGGATCGTTAG

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

98.901

100

0.989

Multiple sequence alignment