Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   SSU16085_RS10165 Genome accession   NZ_CP058740
Coordinates   2101298..2102584 (+) Length   428 a.a.
NCBI ID   WP_002939120.1    Uniprot ID   -
Organism   Streptococcus suis strain 16085/3b     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2096298..2107584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU16085_RS10140 (SSU16085_02066) - 2096826..2098088 (-) 1263 WP_002939093.1 hypothetical protein -
  SSU16085_RS10145 (SSU16085_02067) - 2098102..2098848 (-) 747 WP_002939095.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  SSU16085_RS10150 (SSU16085_02068) prmA 2098850..2099803 (-) 954 WP_002939103.1 50S ribosomal protein L11 methyltransferase -
  SSU16085_RS10155 (SSU16085_02069) - 2100399..2100752 (-) 354 WP_009910982.1 ASCH domain-containing protein -
  SSU16085_RS10160 (SSU16085_02070) - 2100754..2101224 (-) 471 WP_002939116.1 DUF3013 family protein -
  SSU16085_RS10165 (SSU16085_02071) rarA 2101298..2102584 (+) 1287 WP_002939120.1 replication-associated recombination protein A Machinery gene
  SSU16085_RS10180 (SSU16085_02073) - 2103026..2104282 (-) 1257 WP_192062985.1 ISL3 family transposase -
  SSU16085_RS10185 (SSU16085_02074) nrdG 2104487..2105044 (-) 558 WP_002939123.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  SSU16085_RS10190 (SSU16085_02075) - 2105231..2105725 (-) 495 WP_002939125.1 GNAT family N-acetyltransferase -
  SSU16085_RS10195 (SSU16085_02076) - 2105727..2107073 (-) 1347 WP_024394548.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -
  SSU16085_RS10755 (SSU16085_02077) - 2107075..2107209 (-) 135 WP_002939130.1 hypothetical protein -

Sequence

Protein


Download         Length: 428 a.a.        Molecular weight: 47301.95 Da        Isoelectric Point: 6.4389

>NTDB_id=407068 SSU16085_RS10165 WP_002939120.1 2101298..2102584(+) (rarA) [Streptococcus suis strain 16085/3b]
MPANLALRMRPKSIDEVIGQEHLVGPGKIIRRMIDANMLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATTDNQKRL
QEIAEEAKFSGGLVLMLDEIHRLNKTKQDFLLPLLENGNIIMIGATTENPFFSILPAIRSRVQIFELQPLKTSHIRQALE
LALTDSERGFDFPVTIEPEALDFLANATNGDLRAAYNSLELAVLSTKESDDGSRHIDLDAVENSLQKSYISMDKNGDAHY
DILSALQKSIRGSDVNASLHYAARLIEAEDLPSLARRLTVIAYEDIGLANPEAQIHTVTALEAAQKIGFPEARILIANVV
IDLALSPKSNSAYLAMDAALADLRKNGHLPIPNHLRDGHYAGSKELGNAIGYQYPHAYPEKWVDQQYLPDKLLAADYFTA
NDTGKYERALGMTQEKIKNLKKNRRQNP

Nucleotide


Download         Length: 1287 bp        

>NTDB_id=407068 SSU16085_RS10165 WP_002939120.1 2101298..2102584(+) (rarA) [Streptococcus suis strain 16085/3b]
ATGCCAGCCAATCTCGCCCTTCGTATGCGGCCCAAATCCATTGATGAAGTCATCGGTCAGGAACACCTGGTCGGTCCTGG
AAAGATTATCCGTCGCATGATTGATGCCAATATGCTGTCGTCCATGATTCTCTACGGTCCGCCAGGGATTGGTAAGACCT
CGATTGCGTCCGCCATTGCTGGTACGACCAAGTATGCCTTTCGAACCTTTAATGCCACGACAGACAACCAAAAACGCCTG
CAGGAAATCGCTGAAGAAGCTAAATTTTCTGGTGGCCTGGTCCTCATGCTCGATGAAATCCACCGCCTCAACAAGACTAA
ACAGGACTTCCTGCTTCCTCTTTTGGAAAACGGCAATATCATCATGATTGGAGCAACGACGGAAAATCCCTTCTTCTCAA
TTTTGCCTGCCATTCGCAGTCGGGTGCAGATTTTTGAATTACAACCTTTGAAAACCAGTCACATCCGACAGGCCTTGGAA
CTGGCTCTGACAGACAGCGAACGTGGTTTTGATTTTCCCGTCACCATTGAACCTGAGGCCCTGGATTTTCTGGCAAATGC
GACAAACGGTGACCTTCGTGCCGCTTACAATTCTCTAGAACTGGCTGTGCTTTCGACCAAGGAAAGTGACGACGGTAGCC
GCCACATTGATCTGGACGCCGTGGAAAATAGCCTGCAAAAGTCCTACATCAGCATGGACAAGAACGGCGATGCCCACTAC
GATATCCTCTCCGCCCTACAAAAATCCATTCGAGGTAGCGATGTCAATGCCAGCCTCCACTACGCCGCTCGTTTGATTGA
GGCCGAAGATCTGCCTAGTCTGGCCCGTCGCTTGACGGTCATTGCCTACGAAGACATCGGCTTGGCCAATCCAGAGGCTC
AGATTCATACGGTGACGGCCCTTGAAGCCGCCCAGAAAATTGGCTTTCCAGAGGCACGCATTTTGATTGCCAATGTGGTG
ATTGATTTGGCTCTTTCTCCCAAGTCCAATTCTGCCTATCTGGCTATGGATGCAGCTCTGGCTGATTTGCGGAAAAACGG
CCATCTGCCCATTCCAAATCATCTTCGGGATGGCCACTATGCTGGCAGCAAGGAGCTGGGAAATGCTATTGGCTACCAGT
ATCCGCATGCCTATCCTGAAAAATGGGTGGACCAGCAATACCTGCCCGATAAGTTACTAGCTGCGGACTACTTCACCGCC
AACGACACTGGAAAATACGAGCGTGCCTTGGGCATGACACAAGAAAAGATAAAAAATTTGAAAAAAAATAGACGCCAAAA
TCCTTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-416)

AAA C-terminal domain (AAA_assoc_2)

(173-251)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.809

97.664

0.584

Multiple sequence alignment