Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   GPW72_RS13625 Genome accession   NZ_CP046744
Coordinates   1824824..1825831 (-) Length   335 a.a.
NCBI ID   WP_000116737.1    Uniprot ID   O51804
Organism   Vibrio cholerae strain 3569-08     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 1819824..1830831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW72_RS13615 cysM 1820988..1821875 (+) 888 WP_001279365.1 cysteine synthase CysM -
  GPW72_RS13620 mutS 1822143..1824731 (+) 2589 WP_001895515.1 DNA mismatch repair protein MutS -
  GPW72_RS13625 rpoS 1824824..1825831 (-) 1008 WP_000116737.1 RNA polymerase sigma factor RpoS Regulator
  GPW72_RS13630 nlpD 1825905..1826840 (-) 936 WP_000177568.1 murein hydrolase activator NlpD -
  GPW72_RS13635 - 1826840..1827466 (-) 627 WP_000002982.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  GPW72_RS13640 surE 1827459..1828211 (-) 753 WP_000698379.1 5'/3'-nucleotidase SurE -
  GPW72_RS13645 truD 1828213..1829298 (-) 1086 WP_000129752.1 tRNA pseudouridine(13) synthase TruD -
  GPW72_RS13650 ispF 1829328..1829804 (-) 477 WP_000619209.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  GPW72_RS13655 ispD 1829801..1830499 (-) 699 WP_001061952.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  GPW72_RS13660 ftsB 1830496..1830780 (-) 285 WP_001263189.1 cell division protein FtsB -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 38534.39 Da        Isoelectric Point: 4.3648

>NTDB_id=407012 GPW72_RS13625 WP_000116737.1 1824824..1825831(-) (rpoS) [Vibrio cholerae strain 3569-08]
MSVSNTVTKVEEFDFEDEALEVLETDAELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=407012 GPW72_RS13625 WP_000116737.1 1824824..1825831(-) (rpoS) [Vibrio cholerae strain 3569-08]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAGCTCACCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACACCAGAAGAAATTGCTCTTGAGTTAGACCGACCTGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGGGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCTCACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCGCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATCCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCGCTGTTTAACGTCGAATACGACAACTAA

Domains

Predicted by InterproScan.

Sigma-70, region 4 (Sigma70_r4)

(263-316)

Sigma-70 region 3 (Sigma70_r3)

(175-249)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(57-90)

Sigma-70 region 2 (Sigma70_r2)

(95-164)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB O51804

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

100

100

1

Multiple sequence alignment