Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GPW86_RS15135 Genome accession   NZ_CP046742
Coordinates   1969813..1970331 (+) Length   172 a.a.
NCBI ID   WP_001130227.1    Uniprot ID   -
Organism   Vibrio cholerae strain 3523-03     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1964813..1975331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW86_RS15125 - 1965224..1968079 (+) 2856 WP_184476177.1 pitrilysin family protein -
  GPW86_RS15130 gshA 1968191..1969764 (+) 1574 Protein_1700 glutamate--cysteine ligase -
  GPW86_RS15135 luxS 1969813..1970331 (+) 519 WP_001130227.1 S-ribosylhomocysteine lyase Regulator
  GPW86_RS15140 - 1970401..1971681 (-) 1281 WP_000340990.1 HlyC/CorC family transporter -
  GPW86_RS15145 - 1971764..1972558 (-) 795 WP_000369278.1 inner membrane protein YpjD -
  GPW86_RS15150 ffh 1972771..1974156 (+) 1386 WP_000462715.1 signal recognition particle protein -
  GPW86_RS15155 rpsP 1974392..1974640 (+) 249 WP_000256449.1 30S ribosomal protein S16 -
  GPW86_RS15160 rimM 1974668..1975222 (+) 555 WP_076025443.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19080.90 Da        Isoelectric Point: 5.2199

>NTDB_id=406979 GPW86_RS15135 WP_001130227.1 1969813..1970331(+) (luxS) [Vibrio cholerae strain 3523-03]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSERGIHTLEHLYAGFMRNHLNGSQVEIIDISP
MGCRTGFYMSLIGAPTEQQVAQAWLAAMQDVLKVESQEQIPELNEYQCGTAAMHSLEEAKAIAKNVIAAGISVNRNDELA
LPESMLNELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=406979 GPW86_RS15135 WP_001130227.1 1969813..1970331(+) (luxS) [Vibrio cholerae strain 3523-03]
ATGCCATTATTAGACAGTTTTACCGTCGATCATACCCGTATGAATGCACCGGCGGTGCGTGTTGCCAAAACCATGCAAAC
CCCAAAAGGGGATACGATTACCGTATTTGATTTGCGTTTTACTATGCCAAACAAAGATATCTTGTCTGAGCGCGGTATCC
ATACTCTAGAGCATCTCTACGCGGGCTTTATGCGCAATCACCTTAACGGCAGCCAAGTGGAGATCATCGATATTTCACCA
ATGGGTTGCCGTACAGGTTTCTACATGAGCTTGATTGGTGCGCCGACAGAACAGCAAGTGGCACAAGCATGGCTAGCCGC
AATGCAAGATGTGTTGAAAGTTGAAAGCCAAGAGCAAATTCCTGAGCTGAATGAGTACCAGTGCGGCACAGCAGCGATGC
ACTCGCTCGAAGAAGCCAAAGCGATTGCGAAAAACGTGATTGCGGCAGGCATCTCGGTTAACCGTAACGATGAGTTGGCG
CTGCCCGAATCTATGCTCAATGAGCTCAAGGTTCACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

100

100

1

Multiple sequence alignment