Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   GPW86_RS11635 Genome accession   NZ_CP046742
Coordinates   1260251..1261258 (-) Length   335 a.a.
NCBI ID   WP_000224452.1    Uniprot ID   A0A085RG68
Organism   Vibrio cholerae strain 3523-03     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1255251..1266258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW86_RS11610 rraA 1255842..1256357 (-) 516 WP_000456236.1 ribonuclease E activity regulator RraA -
  GPW86_RS11615 - 1256432..1257348 (-) 917 Protein_1089 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  GPW86_RS11620 hslU 1257452..1258783 (-) 1332 WP_033932958.1 HslU--HslV peptidase ATPase subunit -
  GPW86_RS11625 hslV 1258840..1259391 (-) 552 WP_000208248.1 ATP-dependent protease subunit HslV -
  GPW86_RS11630 - 1259528..1260079 (-) 552 WP_001886088.1 SPOR domain-containing protein -
  GPW86_RS11635 cytR 1260251..1261258 (-) 1008 WP_000224452.1 DNA-binding transcriptional regulator CytR Regulator
  GPW86_RS11640 priA 1261564..1263768 (-) 2205 WP_071188118.1 primosomal protein N' -
  GPW86_RS11645 rpmE 1264023..1264241 (+) 219 WP_000643446.1 50S ribosomal protein L31 -
  GPW86_RS11650 - 1264549..1265826 (+) 1278 WP_001278588.1 malic enzyme-like NAD(P)-binding protein -
  GPW86_RS11655 metJ 1265937..1266254 (-) 318 WP_000796267.1 met regulon transcriptional regulator MetJ -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 37018.59 Da        Isoelectric Point: 7.0759

>NTDB_id=406964 GPW86_RS11635 WP_000224452.1 1260251..1261258(-) (cytR) [Vibrio cholerae strain 3523-03]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPSKK

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=406964 GPW86_RS11635 WP_000224452.1 1260251..1261258(-) (cytR) [Vibrio cholerae strain 3523-03]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGAGTTTCAACCGCGACCGTGTCTCGTGCGTTGATGAATCCAGAGAA
AGTCTCGTCGTCCACTCGTAAACGAGTGGAAGAGGCCGTGCTGGAAGCGGGTTACTCACCCAATTCTTTGGCGCGCAATT
TGCGCCGTAATGAATCGAAAACCATCGTTGCTATCGTGCCAGATATCTGTGATCCCTATTTTTCTGAGATCATTCGCGGT
ATTGAAGATGCCGCGATGGAGCACGGTTATCTGGTGCTGTTGGGGGATAGTGGTCAACAGAAGCGTCGGGAGAACTCGTT
CGTTAATCTGGTGTTTACCAAACAGGCAGACGGTATGTTGCTTCTGGGGACAGATTTGCCGTTTGATGTGAGTAAACCTG
AGCAGAAAAACCTACCGCCTATGGTGATGGCGTGTGAATTTGCGCCAGAGCTGGAATTGCCAACGGTACACATTGATAAC
CTGACCTCGGCATTTGAGGCGGTAAACTATCTCACTCAGCTTGGGCACAAACGGATTGCGCAGATCTCAGGTCCACAACA
TGCTGCGCTGTGCCAATTCCGTCATCAAGGCTATCAACAGGCGCTGCGTCGTGCTGGTATCACCATGAACCCGACTTACT
GCACTTTTGGCGATTTCACTTTTGAAGCCGGGGCAAAAGCGGTGCGTCAGCTGTTGGCATTGCCTGAGCAGCCGACCGCG
ATTTTCTGTCATAACGATACGATGGCGATTGGCGCAATTCAGGAAGCGAAGCGACTTGGCTTGCGTGTACCGCAAGATCT
CTCCGTGGTCGGTTTTGATGATATTCAGTTTGCCCAGTACTGCGATCCCCCATTAACCACCATTTCGCAGCCGCGTTATG
AGATTGGCCGTCAAGCCATGCTGATGATGCTTGAGCTGCTTCGCGGACACGATGTACGTGCTGGATCGCGTCTTTTGGAG
ACCAAGCTGGTCGTGCGTGAGAGTGCTGCGCCGCCAAGCAAGAAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085RG68

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

100

100

1
  cytR Vibrio parahaemolyticus RIMD 2210633

90.719

99.701

0.904

Multiple sequence alignment