Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   GPW86_RS04380 Genome accession   NZ_CP046741
Coordinates   792180..793349 (+) Length   389 a.a.
NCBI ID   WP_001039905.1    Uniprot ID   -
Organism   Vibrio cholerae strain 3523-03     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 787180..798349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW86_RS04365 - 788013..789002 (-) 990 WP_032471595.1 GTP-binding protein -
  GPW86_RS04370 clcA 789468..790874 (+) 1407 WP_069503695.1 H(+)/Cl(-) exchange transporter ClcA -
  GPW86_RS04375 - 791021..791983 (+) 963 WP_123011741.1 TDT family transporter -
  GPW86_RS04380 cqsA 792180..793349 (+) 1170 WP_001039905.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  GPW86_RS04385 cqsS 793434..795494 (-) 2061 WP_080480570.1 quorum-sensing CAI-1 autoinducer sensor kinase/phosphatase CqsS Regulator

Sequence

Protein


Download         Length: 389 a.a.        Molecular weight: 43788.05 Da        Isoelectric Point: 6.6781

>NTDB_id=406943 GPW86_RS04380 WP_001039905.1 792180..793349(+) (cqsA) [Vibrio cholerae strain 3523-03]
MNKPQLPDFIQDKIDHFIENFIAINKNGKHLVLGKHASSEDIILQSNDYLSLANHPLIKAHLAKSLLEEHQSLFMSAIFL
QSDYDKPPIESRLAKFTGFKECLLSQSGWCANVGLLQTICQPNTNVYIDFFAHMSLWEGARYANAKIHPFMHNNCDHLRT
LIQRYGPGIIAVDSIYSTIGTLAPLTELVRISQEYGCALLVDESHSLGTHGPKGSGLLAELNLTDEVHFMTASLAKTFSY
RAGAIWCNNEVNRCVPFISYPAIFSSTLLPYEAAGLESTLEIIECSDDKRKKLERMSRKLRIGLTQLGLTIRSESQIISL
ETGDERNTEKVRDFLESNGLFGSVFCRPATTKNKNIIRFSLNSDVTDEQITRIIEICSDAVKRSDFYFR

Nucleotide


Download         Length: 1170 bp        

>NTDB_id=406943 GPW86_RS04380 WP_001039905.1 792180..793349(+) (cqsA) [Vibrio cholerae strain 3523-03]
ATGAACAAGCCTCAACTTCCTGATTTTATTCAGGACAAAATCGACCACTTTATTGAAAACTTTATTGCCATAAACAAAAA
TGGAAAACATTTAGTGCTGGGTAAGCATGCCAGCAGTGAGGATATTATTTTACAAAGCAATGATTATCTCTCCTTGGCTA
ATCATCCATTGATTAAAGCTCACTTAGCAAAGTCATTACTAGAAGAACATCAAAGCCTGTTTATGTCAGCGATCTTTTTA
CAAAGTGATTATGACAAACCACCAATCGAAAGCCGACTGGCTAAATTCACAGGTTTCAAAGAATGTCTGTTATCCCAATC
GGGCTGGTGCGCTAACGTGGGCCTTTTACAGACAATTTGCCAACCGAATACCAATGTATACATCGATTTCTTTGCTCACA
TGTCACTGTGGGAGGGAGCACGTTATGCGAATGCAAAAATACACCCTTTTATGCATAACAACTGCGATCATTTACGCACA
TTAATTCAACGTTACGGCCCTGGAATTATAGCTGTTGACTCCATCTATAGCACAATAGGAACTCTGGCACCGTTAACAGA
ATTAGTCAGAATCAGTCAGGAGTACGGTTGTGCTTTGTTAGTGGATGAATCTCATTCTCTAGGCACGCATGGTCCGAAAG
GTTCTGGTTTACTCGCGGAGTTGAATCTCACTGATGAGGTGCATTTTATGACTGCCAGTTTAGCCAAAACGTTTTCCTAT
CGAGCTGGAGCCATTTGGTGCAACAATGAAGTGAATCGCTGCGTTCCTTTTATTAGTTATCCGGCTATTTTTAGCTCTAC
TTTGCTGCCCTATGAAGCAGCTGGATTGGAAAGTACATTGGAAATTATTGAATGTTCAGATGACAAACGAAAAAAACTAG
AACGTATGTCGAGAAAATTACGTATTGGATTAACCCAACTTGGCTTAACCATCCGCAGTGAAAGCCAGATTATCAGCCTA
GAAACTGGAGATGAAAGAAATACCGAAAAAGTGCGTGACTTCCTAGAGAGTAATGGATTATTTGGGTCAGTATTTTGTAG
GCCGGCCACCACAAAAAATAAAAACATTATTCGTTTCTCACTTAATAGTGATGTGACCGATGAACAGATAACGAGAATAA
TTGAGATCTGTTCTGATGCAGTGAAGCGCAGTGATTTTTACTTTCGCTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(42-375)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

85.861

100

0.859

Multiple sequence alignment