Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   GPW70_RS19315 Genome accession   NZ_CP046740
Coordinates   212358..213218 (-) Length   286 a.a.
NCBI ID   WP_001887331.1    Uniprot ID   -
Organism   Vibrio cholerae strain 3566-06     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 207358..218218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW70_RS05925 gspL 207616..208827 (+) 1212 WP_032473018.1 type II secretion system protein GspL -
  GPW70_RS05930 - 208837..209334 (+) 498 WP_032473017.1 type II secretion system protein M -
  GPW70_RS05935 - 209336..210094 (+) 759 WP_001887338.1 type II secretion system protein N -
  GPW70_RS05940 cysQ 210146..210973 (-) 828 WP_019829131.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  GPW70_RS05945 nudE 210996..211544 (-) 549 WP_000095817.1 ADP compounds hydrolase NudE -
  GPW70_RS05950 nfuA 211683..212270 (-) 588 WP_000070178.1 Fe-S biogenesis protein NfuA -
  GPW70_RS19315 comF 212358..213218 (-) 861 WP_001887331.1 ComF family protein Machinery gene
  GPW70_RS05960 bioH 213154..213915 (+) 762 WP_032473016.1 pimeloyl-ACP methyl ester esterase BioH -
  GPW70_RS05965 - 214078..214548 (+) 471 WP_000961393.1 hypothetical protein -
  GPW70_RS05970 - 214643..216964 (-) 2322 WP_001887329.1 Tex family protein -
  GPW70_RS05975 greB 217209..217691 (+) 483 WP_001965872.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32557.46 Da        Isoelectric Point: 8.0588

>NTDB_id=406941 GPW70_RS19315 WP_001887331.1 212358..213218(-) (comF) [Vibrio cholerae strain 3566-06]
MPQPCTNTRSCPCPLTCQYNAMVTVSPSISIFIHSANWQDEAHYPDSWLAMLTHWLRKTTAPLLTPECHLCRLALDTNSP
FGVCSACQAWLEHGYRCARCGLPTLTPVDQCGQCLSQPPPWRKLMCVGDYRFPLSDAVHQLKYQRQFWQAPRLAKLLATQ
INEPAPLLCSVPLHWRRRWQRGFNQSDLLARELANVLNIEYDHQLFARRRATPHQQGLSKAQRIHNLRDAFVLNHPPNQP
HVAIVDDVVTTGSTIRHLCDLLLDVGVQSIDIYCICRTPEPKDSHG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=406941 GPW70_RS19315 WP_001887331.1 212358..213218(-) (comF) [Vibrio cholerae strain 3566-06]
ATGCCCCAGCCGTGTACCAATACCAGATCTTGCCCTTGTCCACTGACTTGCCAATACAACGCCATGGTCACAGTTTCTCC
GTCTATTTCCATCTTCATCCACTCTGCCAATTGGCAAGATGAAGCACATTACCCCGATTCTTGGCTCGCTATGTTAACCC
ATTGGCTCAGAAAAACTACCGCACCACTGCTGACTCCGGAATGTCATCTCTGCCGACTGGCGCTCGATACAAATTCGCCT
TTTGGCGTCTGCTCTGCCTGCCAAGCTTGGCTTGAGCACGGTTATCGCTGCGCACGCTGCGGTTTACCGACTCTTACCCC
AGTTGACCAGTGCGGACAGTGTTTGAGTCAGCCTCCGCCGTGGCGAAAACTGATGTGTGTCGGCGATTACCGCTTCCCAC
TTAGTGATGCGGTGCATCAACTCAAATACCAACGCCAGTTTTGGCAAGCGCCGCGCTTGGCTAAGCTACTCGCCACCCAG
ATTAACGAGCCCGCCCCTTTGCTGTGCAGCGTGCCACTGCATTGGCGGCGACGCTGGCAACGCGGCTTTAATCAAAGCGA
TCTGCTGGCACGTGAATTAGCCAATGTGCTGAACATTGAATATGACCACCAACTCTTTGCACGCCGCCGAGCCACACCGC
ATCAACAAGGACTCAGCAAGGCGCAGCGAATCCACAACCTACGTGATGCGTTTGTGCTGAATCATCCGCCAAACCAACCA
CATGTTGCGATTGTGGACGATGTGGTGACCACAGGCAGTACGATCCGACATTTATGCGATTTACTGCTTGATGTCGGTGT
GCAAAGCATTGATATTTACTGCATATGCCGCACTCCCGAGCCGAAAGATAGCCACGGTTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(189-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

98.951

100

0.99
  comF Vibrio campbellii strain DS40M4

46.639

83.217

0.388

Multiple sequence alignment