Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   GPW70_RS16805 Genome accession   NZ_CP046740
Coordinates   2616140..2617147 (-) Length   335 a.a.
NCBI ID   WP_000116735.1    Uniprot ID   A0A085SEX1
Organism   Vibrio cholerae strain 3566-06     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 2611140..2622147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW70_RS16795 cysM 2612303..2613190 (+) 888 WP_001888660.1 cysteine synthase CysM -
  GPW70_RS16800 mutS 2613458..2616046 (+) 2589 WP_001888658.1 DNA mismatch repair protein MutS -
  GPW70_RS16805 rpoS 2616140..2617147 (-) 1008 WP_000116735.1 RNA polymerase sigma factor RpoS Regulator
  GPW70_RS16810 nlpD 2617221..2618156 (-) 936 WP_000177561.1 murein hydrolase activator NlpD -
  GPW70_RS16815 - 2618156..2618782 (-) 627 WP_000002982.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  GPW70_RS16820 surE 2618775..2619527 (-) 753 WP_032472724.1 5'/3'-nucleotidase SurE -
  GPW70_RS16825 truD 2619529..2620614 (-) 1086 WP_001888656.1 tRNA pseudouridine(13) synthase TruD -
  GPW70_RS16830 ispF 2620644..2621120 (-) 477 WP_032472723.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  GPW70_RS16835 ispD 2621117..2621815 (-) 699 WP_001888653.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  GPW70_RS16840 ftsB 2621812..2622096 (-) 285 WP_001263189.1 cell division protein FtsB -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 38504.37 Da        Isoelectric Point: 4.3648

>NTDB_id=406932 GPW70_RS16805 WP_000116735.1 2616140..2617147(-) (rpoS) [Vibrio cholerae strain 3566-06]
MSVSNTVTKVEEFDFEDEALEVLETDAELASDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=406932 GPW70_RS16805 WP_000116735.1 2616140..2617147(-) (rpoS) [Vibrio cholerae strain 3566-06]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAGCTCGCCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTAATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACGCCAGAAGAAATTGCTCTTGAGTTAGATCGACCTGTCGATGATGTGACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGGGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCTCACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCGCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATCCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCGCTGTTTAACGTCGAATACGACAACTAA

Domains

Predicted by InterproScan.

Sigma-70 region 3 (Sigma70_r3)

(175-249)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(57-90)

Sigma-70 region 2 (Sigma70_r2)

(95-164)

Sigma-70, region 4 (Sigma70_r4)

(263-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085SEX1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

99.701

100

0.997

Multiple sequence alignment