Detailed information NTG0406921

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: GPW70_RS13255
• Genome accession: NZ_CP046740
• Coordinates: 1837994..1839418 (+)
• Length: 474 a.a.
• NCBI ID: WP_001888281.1
• Uniprot ID: -
• Organism: Vibrio cholerae strain 3566-06
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1832994..1844418

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPW70_RS13235	-	1833264..1834049 (-)	786	WP_000718973.1	adenosylcobinamide-GDP ribazoletransferase	-
GPW70_RS13240	cobT	1834049..1835074 (-)	1026	WP_032472826.1	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	-
GPW70_RS13245	msrB	1835685..1836131 (-)	447	WP_000935890.1	peptide-methionine (R)-S-oxide reductase MsrB	-
GPW70_RS13250	-	1836477..1837850 (+)	1374	WP_000117953.1	L-cystine transporter	-
GPW70_RS13255	sbcB	1837994..1839418 (+)	1425	WP_001888281.1	exodeoxyribonuclease I	Machinery gene
GPW70_RS13260	-	1839450..1839824 (+)	375	WP_001881007.1	CidA/LrgA family protein	-
GPW70_RS13265	-	1839815..1840489 (+)	675	WP_000266239.1	LrgB family protein	-
GPW70_RS13270	cdd	1840659..1841546 (+)	888	WP_001245900.1	cytidine deaminase	-
GPW70_RS13275	-	1841705..1842580 (+)	876	WP_001888283.1	AEC family transporter	-
GPW70_RS13280	purT	1842734..1843909 (+)	1176	WP_000468083.1	phosphoribosylglycinamide formyltransferase 2	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54542.94 Da
• Isoelectric Point: 5.9820

>NTDB_id=406921 GPW70_RS13255 WP_001888281.1 1837994..1839418(+) (sbcB) [Vibrio cholerae strain 3566-06]
MQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGITPQKANSQGLAEP
EFIARIHAELSTPNTISLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHY
TSWIVPIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAQ
KIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFNQESDVDSQLYTGFFSPADRAAMEIIRTTAPENLGSLAIQVADK
RIEPLLFRYRARHYPHTLTDAEQRRWAAHCRDYFERNLEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLAC

Nucleotide

• Length: 1425 bp

>NTDB_id=406921 GPW70_RS13255 WP_001888281.1 1837994..1839418(+) (sbcB) [Vibrio cholerae strain 3566-06]
ATGCAGCAAGAACACCAGCCCACATTCTTCTTCTTTGACTACGAGACTTGGGGAGTCAATCCCGCCAAAGATCGTCCTAG
TCAGTTTGCGGGTGTGCGTACCGATATGGACTTCAACATCATCGGCGAGCCTTTGGTAATTTACTGTCAGCTGCCCAACG
ACTATTTACCTGCTCCTGAAGCCGCATTGATCACAGGGATCACTCCTCAAAAAGCCAATAGCCAAGGTCTCGCGGAGCCC
GAATTTATCGCGCGTATTCATGCTGAACTCTCCACACCCAATACCATCAGCCTAGGCTATAACAGCATACGTTTTGATGA
TGAAGTGACGCGCTACACCTGCTATCGCAACTTTATCGACCCCTATGCTTGGAGCTGGCAACACGGCAATTCTCGTTGGG
ATCTGCTGGATGTGCTTCGCGCGTGTCATGCTTTGCGTCCTGAAGGTATCGAGTGGCCGGAAAATGATGACGGCTTTACC
AGCTTTAAACTGGAACATCTTTCTGTTGCCAACGGCATTGAGCACAGCAACGCGCACGATGCGATGGCCGATGTGATTGC
CACCATTGAATTGGCGAAAAAAGTCAAAGCCGCGCAGCCGAAATTATTCGACTACTTCTTCACTATGCGCCACAAACGAA
AGCTGACAGAACTGATTGATATTGTGAACCAAACTCCGCTGATGCATGTTTCTGGCATGCTTGGGCGTGAGCGTCACTAC
ACTAGCTGGATTGTGCCGATTGCTTGGCATCCGACCAATCAAAATGCGGTGATTGTGGTGGATTTGGGTAAAGACCCTCA
GCCGCTGCTGGAGCTCGATGCCGAAACGCTGCAAGCACGTCTCTATACGCGGTATGAAGACCTAGCGCCGGATGAGCTAC
CAGTACCCGTGAAATTGGTACATCTCAATAAATGCCCTATTCTGGCTCCGGCCAAAACCTTGACCGCCGAAAATGCACAA
AAGATTGGTATTGACCGCGAACAGTGTCTCGCGCACTTGAATGTGATTCGTCAACACCCCGAGATTCGTGAAAAGCTGGT
GACTGTATTTAGCCAAGAGCGCGAATTTAACCAAGAGAGTGATGTGGATAGCCAACTCTATACCGGCTTTTTCTCCCCAG
CCGATCGCGCGGCGATGGAGATCATCCGCACCACTGCACCGGAGAATCTGGGCAGCTTAGCGATACAGGTGGCCGATAAG
CGCATTGAGCCACTGCTGTTTCGTTATCGTGCGCGCCATTATCCCCACACCTTAACCGATGCCGAGCAACGCCGCTGGGC
AGCGCATTGTCGTGACTATTTCGAGCGCAATCTAGAAGGTTATATGTTGAATTTGGAAAATCTGGTGCATGAACATCAAG
CTGATCCAAAGAAAATGGCGATTTTAAAATCCGTCTACCATTACGTGGAAAAACTCGCTTGCTAA

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

• Exonuclease (RNase_T) (11-191)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	99.156	100	0.992