Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   GPW70_RS06160 Genome accession   NZ_CP046740
Coordinates   264722..265729 (+) Length   335 a.a.
NCBI ID   WP_000224452.1    Uniprot ID   A0A085RG68
Organism   Vibrio cholerae strain 3566-06     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 259722..270729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW70_RS06140 metJ 259726..260043 (+) 318 WP_000796267.1 met regulon transcriptional regulator MetJ -
  GPW70_RS06145 - 260154..261431 (-) 1278 WP_001278588.1 malic enzyme-like NAD(P)-binding protein -
  GPW70_RS06150 rpmE 261739..261957 (-) 219 WP_000643446.1 50S ribosomal protein L31 -
  GPW70_RS06155 priA 262212..264416 (+) 2205 WP_001247903.1 primosomal protein N' -
  GPW70_RS06160 cytR 264722..265729 (+) 1008 WP_000224452.1 DNA-binding transcriptional regulator CytR Regulator
  GPW70_RS06165 - 265901..266452 (+) 552 WP_001884022.1 SPOR domain-containing protein -
  GPW70_RS06170 hslV 266589..267146 (+) 558 WP_000208249.1 ATP-dependent protease subunit HslV -
  GPW70_RS06175 hslU 267212..268543 (+) 1332 WP_001293366.1 HslU--HslV peptidase ATPase subunit -
  GPW70_RS06180 - 268647..269564 (+) 918 WP_001066162.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  GPW70_RS06185 rraA 269639..270154 (+) 516 WP_000456236.1 ribonuclease E activity regulator RraA -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 37018.59 Da        Isoelectric Point: 7.0759

>NTDB_id=406903 GPW70_RS06160 WP_000224452.1 264722..265729(+) (cytR) [Vibrio cholerae strain 3566-06]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPSKK

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=406903 GPW70_RS06160 WP_000224452.1 264722..265729(+) (cytR) [Vibrio cholerae strain 3566-06]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGAGTTTCAACCGCGACCGTGTCTCGTGCGTTGATGAATCCAGAGAA
AGTCTCGTCGTCCACTCGTAAACGAGTGGAAGAGGCCGTGCTGGAAGCGGGTTACTCACCCAATTCTTTGGCGCGCAATT
TGCGCCGTAATGAATCGAAAACCATCGTTGCTATCGTGCCAGATATCTGTGATCCCTACTTTTCTGAGATCATTCGCGGT
ATTGAAGATGCCGCGATGGAGCACGGTTATCTGGTGCTGTTGGGGGATAGTGGTCAACAGAAGCGTCGGGAGAACTCGTT
CGTTAATCTGGTGTTTACCAAACAGGCAGACGGTATGTTGCTGCTGGGGACAGATTTGCCGTTTGATGTGAGTAAACCTG
AGCAGAAAAACCTACCGCCTATGGTGATGGCGTGTGAATTTGCGCCAGAGCTGGAATTGCCAACGGTACACATTGATAAC
CTGACCTCGGCATTTGAGGCGGTAAACTATCTCACTCAGCTTGGGCACAAACGGATTGCGCAGATCTCAGGTCCACAACA
TGCTGCGCTGTGCCAATTCCGTCATCAAGGCTATCAACAGGCGCTGCGTCGTGCTGGTATCACCATGAACCCGACTTACT
GCACTTTTGGCGATTTCACTTTTGAAGCCGGGGCAAAAGCGGTGCGTCAGCTGTTGGCATTGCCTGAGCAGCCGACCGCG
ATTTTCTGTCACAACGATACGATGGCGATTGGCGCAATTCAGGAAGCGAAGCGACTTGGCTTGCGTGTACCGCAAGATCT
CTCCGTGGTCGGTTTTGATGATATTCAGTTTGCCCAGTACTGCGATCCCCCATTAACCACCATTTCGCAGCCGCGTTATG
AGATTGGCCGTCAAGCCATGCTGATGATGCTCGAATTATTGCGTGGACATGATGTGCGTGCAGGATCGCGTCTTTTGGAG
ACCAAGCTGGTCGTGCGTGAGAGTGCTGCGCCGCCAAGCAAGAAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085RG68

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

100

100

1
  cytR Vibrio parahaemolyticus RIMD 2210633

90.719

99.701

0.904

Multiple sequence alignment