Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   HZS87_RS19890 Genome accession   NZ_CP058725
Coordinates   4088420..4089412 (+) Length   330 a.a.
NCBI ID   WP_000081550.1    Uniprot ID   A0A370V765
Organism   Escherichia coli strain S171-1     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 4083420..4094412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZS87_RS19860 ispD 4083481..4084191 (+) 711 WP_000246138.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  HZS87_RS19865 ispF 4084191..4084670 (+) 480 WP_001219242.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  HZS87_RS19870 truD 4084667..4085716 (+) 1050 WP_000568943.1 tRNA pseudouridine(13) synthase TruD -
  HZS87_RS19875 surE 4085697..4086458 (+) 762 WP_001295182.1 5'/3'-nucleotidase SurE -
  HZS87_RS19880 pcm 4086452..4087078 (+) 627 WP_000254708.1 protein-L-isoaspartate O-methyltransferase -
  HZS87_RS19885 nlpD 4087263..4088357 (+) 1095 WP_224692580.1 murein hydrolase activator NlpD -
  HZS87_RS19890 rpoS 4088420..4089412 (+) 993 WP_000081550.1 RNA polymerase sigma factor RpoS Regulator
  HZS87_RS19895 ygbN 4089506..4090870 (-) 1365 WP_000104429.1 GntP family transporter -
  HZS87_RS19900 ygbM 4090959..4091735 (-) 777 WP_001136918.1 HPr family phosphocarrier protein -
  HZS87_RS19905 ygbL 4091740..4092378 (-) 639 WP_001278994.1 aldolase -
  HZS87_RS19910 otnK 4092375..4093637 (-) 1263 WP_000590405.1 3-oxo-tetronate kinase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 37972.84 Da        Isoelectric Point: 4.5597

>NTDB_id=406896 HZS87_RS19890 WP_000081550.1 4088420..4089412(+) (rpoS) [Escherichia coli strain S171-1]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide


Download         Length: 993 bp        

>NTDB_id=406896 HZS87_RS19890 WP_000081550.1 4088420..4089412(+) (rpoS) [Escherichia coli strain S171-1]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(174-248)

Sigma-70 region 2 (Sigma70_r2)

(94-163)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(56-88)

Sigma-70, region 4 (Sigma70_r4)

(262-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V765

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

73.065

97.879

0.715