Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   GPW70_RS01165 Genome accession   NZ_CP046739
Coordinates   177429..178523 (-) Length   364 a.a.
NCBI ID   WP_001888026.1    Uniprot ID   -
Organism   Vibrio cholerae strain 3566-06     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 172429..183523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW70_RS01140 - 172782..173180 (+) 399 WP_000831416.1 YgiW/YdeI family stress tolerance OB fold protein -
  GPW70_RS01150 - 173419..173937 (+) 519 WP_001913458.1 hypothetical protein -
  GPW70_RS01155 - 174181..174846 (+) 666 WP_000268198.1 flagellar brake protein -
  GPW70_RS01160 luxQ 174838..177411 (-) 2574 WP_019829257.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ Regulator
  GPW70_RS01165 luxP 177429..178523 (-) 1095 WP_001888026.1 substrate-binding domain-containing protein Regulator
  GPW70_RS01170 traF 178735..179895 (-) 1161 WP_019829259.1 conjugal transfer protein TraF -
  GPW70_RS01175 - 179997..180302 (-) 306 WP_000429067.1 GIY-YIG nuclease family protein -
  GPW70_RS01180 - 180319..180969 (-) 651 WP_001888029.1 YceH family protein -
  GPW70_RS01185 - 181011..181208 (-) 198 WP_032472596.1 hypothetical protein -
  GPW70_RS01190 - 181396..181716 (+) 321 WP_001089529.1 DUF496 family protein -
  GPW70_RS01200 - 182129..182380 (+) 252 WP_001888031.1 YgjV family protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 41210.84 Da        Isoelectric Point: 6.3129

>NTDB_id=406895 GPW70_RS01165 WP_001888026.1 177429..178523(-) (luxP) [Vibrio cholerae strain 3566-06]
MKRKLISPLFLIAALFSSTGQADSLKGYWHYDEFLAEFPEQRPISELFAQTIRDKPSALTVAQEQPVIISVVYPGQQISD
YWVRNIKAFEKRMDALGIRYQINQVFTRPNLDTRQQSVSLMEALKNKSDYLIFTLDTTRHRKFIEHVLHSSETKLILQNI
TTPVKDWQGKQPMMYIGFDHEYGAQLLAQYYQAHAPKKPYSVLYFSEGYISEARGDTFIQDMNAVHHFPLASSYYTKATE
QSGYEATLNIVKNNPEIGFIYACATDVALGAAQALKELNRQDILVNGWGGGSAELEALAKGELDVTVMRMNDDTGVAMAE
AIKWDLEGKSVPLVYSGDFEVVTKQDSAARIAELKARAFRYSDR

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=406895 GPW70_RS01165 WP_001888026.1 177429..178523(-) (luxP) [Vibrio cholerae strain 3566-06]
ATGAAAAGAAAGCTAATATCTCCGCTGTTTCTGATAGCAGCACTCTTCAGCTCAACTGGTCAAGCCGATTCATTAAAAGG
CTATTGGCATTATGATGAATTTCTTGCTGAGTTCCCTGAACAGCGGCCAATTTCCGAGCTTTTTGCTCAAACAATTCGTG
ATAAACCGAGTGCGTTGACGGTGGCGCAAGAACAACCCGTCATTATTTCGGTGGTCTATCCCGGACAGCAAATTTCCGAC
TATTGGGTTCGCAACATCAAAGCGTTTGAAAAGCGAATGGACGCTTTAGGGATTCGCTATCAAATCAATCAGGTGTTTAC
TCGCCCGAATCTTGATACTCGCCAGCAGAGTGTTTCCTTGATGGAAGCGCTGAAAAATAAGAGCGACTATCTGATTTTTA
CCTTAGATACCACCCGTCACCGCAAATTCATTGAGCATGTGCTGCACTCCTCCGAAACGAAACTGATTTTGCAAAACATC
ACGACGCCAGTCAAAGATTGGCAAGGCAAGCAGCCCATGATGTACATCGGTTTTGATCATGAGTACGGTGCGCAATTATT
GGCGCAATATTACCAAGCACATGCCCCGAAAAAGCCGTACTCAGTGCTTTATTTTTCCGAGGGGTATATCAGTGAAGCGC
GGGGAGACACCTTCATTCAAGATATGAACGCGGTGCACCATTTTCCGTTGGCTTCTTCCTATTACACCAAGGCAACCGAG
CAAAGTGGCTATGAAGCGACCCTAAACATCGTCAAGAATAATCCAGAAATTGGCTTTATTTACGCCTGTGCGACGGACGT
GGCTTTGGGAGCTGCGCAGGCACTGAAAGAGCTGAATCGACAAGATATTCTCGTCAATGGTTGGGGAGGCGGCTCGGCAG
AGCTTGAAGCGCTTGCCAAAGGAGAATTGGATGTCACTGTGATGCGTATGAATGACGATACGGGTGTGGCGATGGCCGAA
GCGATTAAATGGGATTTGGAAGGGAAATCCGTACCTTTGGTCTATTCAGGCGATTTTGAAGTGGTCACCAAACAAGATTC
AGCAGCACGTATTGCAGAACTGAAAGCTCGGGCTTTCCGTTATTCGGATCGTTAG

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

99.725

100

0.997

Multiple sequence alignment