Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   GPW74_RS11810 Genome accession   NZ_CP046737
Coordinates   2575998..2577005 (+) Length   335 a.a.
NCBI ID   WP_000116735.1    Uniprot ID   A0A085SEX1
Organism   Vibrio cholerae strain 2015V-1126     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 2570998..2582005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW74_RS11775 ftsB 2571049..2571333 (+) 285 WP_001263189.1 cell division protein FtsB -
  GPW74_RS11780 ispD 2571330..2572028 (+) 699 WP_123012651.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  GPW74_RS11785 ispF 2572025..2572501 (+) 477 WP_000619207.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  GPW74_RS11790 truD 2572531..2573616 (+) 1086 WP_123012652.1 tRNA pseudouridine(13) synthase TruD -
  GPW74_RS11795 surE 2573618..2574370 (+) 753 WP_162811959.1 5'/3'-nucleotidase SurE -
  GPW74_RS11800 - 2574363..2574989 (+) 627 WP_085603387.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  GPW74_RS11805 nlpD 2574989..2575924 (+) 936 WP_000177561.1 murein hydrolase activator NlpD -
  GPW74_RS11810 rpoS 2575998..2577005 (+) 1008 WP_000116735.1 RNA polymerase sigma factor RpoS Regulator
  GPW74_RS11815 mutS 2577099..2579687 (-) 2589 WP_085603449.1 DNA mismatch repair protein MutS -
  GPW74_RS11820 cysM 2579955..2580842 (-) 888 WP_001279365.1 cysteine synthase CysM -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 38504.37 Da        Isoelectric Point: 4.3648

>NTDB_id=406880 GPW74_RS11810 WP_000116735.1 2575998..2577005(+) (rpoS) [Vibrio cholerae strain 2015V-1126]
MSVSNTVTKVEEFDFEDEALEVLETDAELASDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=406880 GPW74_RS11810 WP_000116735.1 2575998..2577005(+) (rpoS) [Vibrio cholerae strain 2015V-1126]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAGCTCGCCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCTATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACGCCAGAAGAAATTGCTCTTGAGTTAGATCGACCTGTCGATGATGTGACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGGGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCTCACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCTCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATCCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCGCTGTTTAACGTCGAATACGACAACTAA

Domains

Predicted by InterproScan.

Sigma-70 region 3 (Sigma70_r3)

(175-249)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(57-90)

Sigma-70 region 2 (Sigma70_r2)

(95-164)

Sigma-70, region 4 (Sigma70_r4)

(263-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085SEX1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

99.701

100

0.997

Multiple sequence alignment