Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   GPW74_RS08580 Genome accession   NZ_CP046737
Coordinates   1910356..1911363 (-) Length   335 a.a.
NCBI ID   WP_000224452.1    Uniprot ID   A0A085RG68
Organism   Vibrio cholerae strain 2015V-1126     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1905356..1916363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW74_RS08555 rraA 1905931..1906446 (-) 516 WP_000456236.1 ribonuclease E activity regulator RraA -
  GPW74_RS08560 - 1906521..1907438 (-) 918 WP_001066162.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  GPW74_RS08565 hslU 1907542..1908873 (-) 1332 WP_001293366.1 HslU--HslV peptidase ATPase subunit -
  GPW74_RS08570 hslV 1908939..1909496 (-) 558 WP_000208247.1 ATP-dependent protease subunit HslV -
  GPW74_RS08575 - 1909633..1910184 (-) 552 WP_001891621.1 SPOR domain-containing protein -
  GPW74_RS08580 cytR 1910356..1911363 (-) 1008 WP_000224452.1 DNA-binding transcriptional regulator CytR Regulator
  GPW74_RS08585 priA 1911669..1913873 (-) 2205 WP_085603475.1 primosomal protein N' -
  GPW74_RS08590 rpmE 1914128..1914346 (+) 219 WP_000643446.1 50S ribosomal protein L31 -
  GPW74_RS08595 - 1914654..1915931 (+) 1278 WP_001278591.1 malic enzyme-like NAD(P)-binding protein -
  GPW74_RS08600 metJ 1916043..1916360 (-) 318 WP_000796267.1 met regulon transcriptional regulator MetJ -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 37018.59 Da        Isoelectric Point: 7.0759

>NTDB_id=406868 GPW74_RS08580 WP_000224452.1 1910356..1911363(-) (cytR) [Vibrio cholerae strain 2015V-1126]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPSKK

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=406868 GPW74_RS08580 WP_000224452.1 1910356..1911363(-) (cytR) [Vibrio cholerae strain 2015V-1126]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGAGTTTCAACCGCGACCGTGTCTCGTGCGTTGATGAATCCAGAGAA
AGTCTCGTCGTCCACTCGTAAACGAGTGGAAGAGGCCGTGCTGGAAGCGGGTTACTCACCCAATTCTTTGGCGCGCAATT
TGCGCCGTAATGAATCGAAAACCATCGTTGCTATCGTGCCAGATATCTGTGATCCCTACTTTTCTGAGATCATTCGCGGT
ATTGAAGATGCCGCGATGGAGCACGGTTATCTGGTGCTGTTGGGGGATAGTGGTCAACAGAAGCGTCGGGAGAACTCGTT
CGTTAATCTGGTGTTTACCAAACAGGCAGACGGTATGTTGCTGCTGGGGACAGATTTGCCGTTTGATGTGAGTAAACCTG
AGCAGAAAAACTTGCCACCAATGGTGATGGCATGTGAATTTGCCCCCGAACTTGAATTGCCTACCGTTCACATTGATAAC
CTGACCTCGGCATTTGAGGCGGTAAACTATCTCACTCAGCTTGGGCACAAACGGATTGCGCAGATCTCAGGTCCACAACA
TGCTGCGCTGTGCCAATTCCGTCATCAAGGCTATCAACAGGCGCTGCGTCGTGCTGGCATCACCATGAACCCGACTTACT
GCACTTTTGGCGATTTCACTTTTGAAGCCGGGGCAAAAGCGGTGCGTCAGCTGTTGGCATTGCCTGAGCAGCCGACCGCG
ATTTTCTGTCACAACGATACGATGGCGATTGGCGCAATTCAGGAAGCGAAGCGACTTGGCTTGCGCGTACCGCAAGATCT
CTCCGTGGTCGGTTTTGACGATATTCAGTTTGCCCAGTACTGCGATCCCCCATTAACCACCATTTCGCAGCCGCGTTATG
AGATTGGCCGTCAAGCCATGCTGATGATGCTTGAGCTGCTTCGCGGACACGATGTACGTGCTGGATCGCGTCTTTTGGAG
ACCAAGCTGGTCGTGCGTGAGAGTGCTGCGCCGCCAAGCAAGAAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085RG68

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

100

100

1
  cytR Vibrio parahaemolyticus RIMD 2210633

90.719

99.701

0.904

Multiple sequence alignment