Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HZS87_RS09535 Genome accession   NZ_CP058725
Coordinates   1924238..1924843 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain S171-1     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1919238..1929843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZS87_RS09515 aes 1919275..1920234 (+) 960 WP_000801849.1 acetyl esterase -
  HZS87_RS09520 hemH 1920231..1921193 (-) 963 WP_001250117.1 ferrochelatase -
  HZS87_RS09525 adk 1921429..1922073 (-) 645 WP_001220233.1 adenylate kinase -
  HZS87_RS09530 htpG 1922254..1924128 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  HZS87_RS09535 recR 1924238..1924843 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  HZS87_RS09540 ybaB 1924843..1925172 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  HZS87_RS09545 dnaX 1925225..1927156 (-) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  HZS87_RS09550 apt 1927285..1927836 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  HZS87_RS09555 ybaN 1927989..1928366 (-) 378 WP_001188905.1 DUF454 family protein -
  HZS87_RS09560 priC 1928436..1928963 (+) 528 WP_000844874.1 primosomal replication protein N'' -
  HZS87_RS09565 rsmS 1928977..1929138 (+) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=406850 HZS87_RS09535 WP_001195025.1 1924238..1924843(-) (recR) [Escherichia coli strain S171-1]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=406850 HZS87_RS09535 WP_001195025.1 1924238..1924843(-) (recR) [Escherichia coli strain S171-1]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTTCCGGTTGGCGGCGAGCTGGAAATGGTCGACGGCAC
CACGTTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment