Detailed information NTG0406843

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: GPW66_RS16195
• Genome accession: NZ_CP046736
• Coordinates: 2473561..2474985 (+)
• Length: 474 a.a.
• NCBI ID: WP_001888281.1
• Uniprot ID: -
• Organism: Vibrio cholerae strain 3528-08
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2468561..2479985

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GPW66_RS16175	-	2468831..2469616 (-)	786	WP_000718973.1	adenosylcobinamide-GDP ribazoletransferase	-
GPW66_RS16180	cobT	2469616..2470641 (-)	1026	WP_032472826.1	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	-
GPW66_RS16185	msrB	2471252..2471698 (-)	447	WP_000935890.1	peptide-methionine (R)-S-oxide reductase MsrB	-
GPW66_RS16190	-	2472044..2473417 (+)	1374	WP_000117953.1	L-cystine transporter	-
GPW66_RS16195	sbcB	2473561..2474985 (+)	1425	WP_001888281.1	exodeoxyribonuclease I	Machinery gene
GPW66_RS16200	-	2475017..2475391 (+)	375	WP_001881007.1	CidA/LrgA family protein	-
GPW66_RS16205	-	2475382..2476056 (+)	675	WP_000266239.1	LrgB family protein	-
GPW66_RS16210	cdd	2476226..2477113 (+)	888	WP_001245900.1	cytidine deaminase	-
GPW66_RS16215	-	2477272..2478147 (+)	876	WP_001888283.1	AEC family transporter	-
GPW66_RS16220	purT	2478301..2479476 (+)	1176	WP_000468083.1	phosphoribosylglycinamide formyltransferase 2	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54542.94 Da
• Isoelectric Point: 5.9820

>NTDB_id=406843 GPW66_RS16195 WP_001888281.1 2473561..2474985(+) (sbcB) [Vibrio cholerae strain 3528-08]
MQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGITPQKANSQGLAEP
EFIARIHAELSTPNTISLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHY
TSWIVPIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAQ
KIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFNQESDVDSQLYTGFFSPADRAAMEIIRTTAPENLGSLAIQVADK
RIEPLLFRYRARHYPHTLTDAEQRRWAAHCRDYFERNLEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLAC

Nucleotide

• Length: 1425 bp

>NTDB_id=406843 GPW66_RS16195 WP_001888281.1 2473561..2474985(+) (sbcB) [Vibrio cholerae strain 3528-08]
ATGCAGCAAGAACACCAGCCCACATTCTTCTTCTTTGACTACGAGACTTGGGGAGTCAATCCCGCCAAAGATCGTCCTAG
TCAGTTTGCGGGTGTGCGTACCGATATGGACTTCAACATCATCGGCGAGCCTTTGGTAATTTACTGTCAGCTGCCCAACG
ACTATTTACCTGCTCCTGAAGCCGCATTGATCACAGGGATCACTCCTCAAAAAGCCAATAGCCAAGGTCTCGCGGAGCCC
GAATTTATCGCGCGTATTCATGCTGAACTCTCCACACCCAATACCATCAGCCTAGGCTATAACAGCATACGTTTTGATGA
TGAAGTGACGCGCTACACCTGCTATCGCAACTTTATCGACCCCTATGCTTGGAGCTGGCAACACGGCAATTCTCGTTGGG
ATCTGCTGGATGTGCTTCGCGCGTGTCATGCTTTGCGTCCTGAAGGTATCGAGTGGCCGGAAAATGATGACGGCTTTACC
AGCTTTAAACTGGAACATCTTTCTGTTGCCAACGGCATTGAGCACAGCAACGCGCACGATGCGATGGCCGATGTGATTGC
CACCATTGAATTGGCGAAAAAAGTCAAAGCCGCGCAGCCGAAATTATTCGACTACTTCTTCACTATGCGCCACAAACGAA
AGCTGACAGAACTGATTGATATTGTGAACCAAACTCCGCTGATGCATGTTTCTGGCATGCTTGGGCGTGAGCGTCACTAC
ACTAGCTGGATTGTGCCGATTGCTTGGCATCCGACCAATCAAAATGCGGTGATTGTGGTGGATTTGGGTAAAGACCCTCA
GCCGCTGCTGGAGCTCGATGCCGAAACGCTGCAAGCACGTCTCTATACGCGGTATGAAGACCTAGCGCCGGATGAGCTAC
CAGTACCCGTGAAATTGGTACATCTCAATAAATGCCCTATTCTGGCTCCGGCCAAAACCTTGACCGCCGAAAATGCACAA
AAGATTGGTATTGACCGCGAACAGTGTCTCGCGCACTTGAATGTGATTCGTCAACACCCCGAGATTCGTGAAAAGCTGGT
GACTGTATTTAGCCAAGAGCGCGAATTTAACCAAGAGAGTGATGTGGATAGCCAACTCTATACCGGCTTTTTCTCCCCAG
CCGATCGCGCGGCGATGGAGATCATCCGCACCACTGCACCGGAGAATCTGGGCAGCTTAGCGATACAGGTGGCCGATAAG
CGCATTGAGCCACTGCTGTTTCGTTATCGTGCGCGCCATTATCCCCACACCTTAACCGATGCCGAGCAACGCCGCTGGGC
AGCGCATTGTCGTGACTATTTCGAGCGCAATCTAGAAGGTTATATGTTGAATTTGGAAAATCTGGTGCATGAACATCAAG
CTGATCCAAAGAAAATGGCGATTTTAAAATCCGTCTACCATTACGTGGAAAAACTCGCTTGCTAA

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

• Exonuclease (RNase_T) (11-191)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	99.156	100	0.992