Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   GPW66_RS03345 Genome accession   NZ_CP046735
Coordinates   749317..750411 (+) Length   364 a.a.
NCBI ID   WP_000823678.1    Uniprot ID   Q9KLK6
Organism   Vibrio cholerae strain 3528-08     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 744317..755411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW66_RS03310 - 745477..745728 (-) 252 WP_001882582.1 YgjV family protein -
  GPW66_RS03320 - 746141..746461 (-) 321 WP_001089529.1 DUF496 family protein -
  GPW66_RS03325 - 746649..746846 (+) 198 WP_001246071.1 hypothetical protein -
  GPW66_RS03330 - 746888..747538 (+) 651 WP_158106212.1 YceH family protein -
  GPW66_RS03335 - 747538..747843 (+) 306 WP_000448829.1 GIY-YIG nuclease family protein -
  GPW66_RS03340 traF 747945..749105 (+) 1161 WP_069503910.1 conjugal transfer protein TraF -
  GPW66_RS03345 luxP 749317..750411 (+) 1095 WP_000823678.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  GPW66_RS03350 luxQ 750429..753002 (+) 2574 WP_158106213.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ Regulator
  GPW66_RS03355 - 752994..753659 (-) 666 WP_000268198.1 flagellar brake protein -
  GPW66_RS03360 - 753903..754421 (-) 519 WP_001913458.1 hypothetical protein -
  GPW66_RS03370 - 754660..755058 (-) 399 WP_000831416.1 YgiW/YdeI family stress tolerance OB fold protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 41196.81 Da        Isoelectric Point: 6.3129

>NTDB_id=406803 GPW66_RS03345 WP_000823678.1 749317..750411(+) (luxP) [Vibrio cholerae strain 3528-08]
MKRKLISPLFLIAALFSSTGQADSLKGYWHYDEFLAEFPEQRPISELFAQTVRDKPSALTVAQEQPVIISVVYPGQQISD
YWVRNIKAFEKRMDALGIRYQINQVFTRPNLDTRQQSVSLMEALKNKSDYLIFTLDTTRHRKFIEHVLHSSETKLILQNI
TTPVKDWQGKQPMMYIGFDHEYGAQLLAQYYQAHAPKKPYSVLYFSEGYISEARGDTFIQDMNAVHHFPLASSYYTKATE
QSGYEATLNIVKNNPEIGFIYACATDVALGAAQALKELNRQDILVNGWGGGSAELEALAKGELDVTVMRMNDDTGVAMAE
AIKWDLEGKSVPLVYSGDFEVVTKQDSAARIAELKARAFRYSDR

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=406803 GPW66_RS03345 WP_000823678.1 749317..750411(+) (luxP) [Vibrio cholerae strain 3528-08]
ATGAAAAGAAAGCTAATATCTCCGCTGTTTCTGATAGCAGCACTCTTCAGCTCAACTGGTCAAGCCGATTCATTAAAAGG
CTATTGGCATTATGATGAATTTCTTGCTGAGTTCCCTGAACAGCGGCCAATTTCCGAGCTTTTTGCTCAAACAGTTCGTG
ATAAACCGAGTGCGTTGACGGTGGCGCAAGAACAACCCGTTATTATTTCAGTGGTCTATCCCGGACAGCAAATTTCCGAC
TATTGGGTTCGCAACATCAAAGCGTTTGAAAAGCGAATGGATGCTTTGGGGATTCGCTATCAAATCAATCAGGTGTTTAC
TCGCCCGAATCTTGATACTCGCCAGCAGAGTGTTTCCTTGATGGAAGCGCTGAAAAATAAGAGCGACTATCTGATTTTTA
CCTTAGATACCACCCGTCACCGCAAATTCATTGAGCATGTGCTGCACTCATCCGAAACGAAACTGATTTTGCAAAACATC
ACGACGCCAGTCAAAGATTGGCAAGGCAAGCAGCCCATGATGTACATCGGTTTTGATCATGAGTACGGTGCGCAATTATT
GGCGCAATATTACCAAGCACATGCCCCGAAAAAGCCGTACTCAGTACTTTATTTTTCCGAGGGGTATATCAGTGAAGCGC
GGGGAGATACCTTCATTCAAGATATGAACGCGGTGCACCATTTTCCGTTGGCTTCTTCCTATTACACCAAGGCAACCGAA
CAAAGTGGCTATGAAGCGACCCTAAACATCGTCAAGAATAATCCAGAAATTGGCTTTATTTACGCCTGTGCGACGGACGT
CGCTTTGGGAGCTGCGCAGGCACTGAAAGAGCTGAATCGACAAGATATTCTGGTCAATGGTTGGGGAGGCGGCTCGGCAG
AGCTTGAAGCGCTTGCCAAAGGAGAATTGGATGTCACTGTGATGCGTATGAATGACGATACGGGTGTGGCGATGGCTGAA
GCGATTAAATGGGATTTGGAAGGGAAATCCGTACCTTTGGTCTATTCAGGCGATTTTGAAGTGGTCACCAAACAAGATTC
AGCAGCACGTATTGCAGAACTGAAAGCTCGGGCTTTCCGTTATTCGGATCGTTAG

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KLK6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

100

100

1

Multiple sequence alignment