Detailed information NTG0406784

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: GO998_RS15425
• Genome accession: NZ_CP046729
• Coordinates: 3276527..3277648 (+)
• Length: 373 a.a.
• NCBI ID: WP_211904044.1
• Uniprot ID: -
• Organism: Ralstonia syzygii strain LLRS-1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3271527..3282648

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GO998_RS15400 (GO998_15405)	-	3271902..3272150 (-)	249	WP_013213627.1	YfhL family 4Fe-4S dicluster ferredoxin	-
GO998_RS15405 (GO998_15410)	coaD	3272201..3272707 (-)	507	WP_003262550.1	pantetheine-phosphate adenylyltransferase	-
GO998_RS15410 (GO998_15415)	rsmD	3272903..3273550 (-)	648	WP_211904041.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
GO998_RS15415 (GO998_15420)	-	3273630..3274973 (-)	1344	WP_211904042.1	M16 family metallopeptidase	-
GO998_RS15420 (GO998_15425)	-	3274973..3276466 (-)	1494	WP_211904043.1	M16 family metallopeptidase	-
GO998_RS15425 (GO998_15430)	pilA	3276527..3277648 (+)	1122	WP_211904044.1	signal recognition particle-docking protein FtsY	Machinery gene
GO998_RS15430 (GO998_15435)	-	3277645..3278283 (-)	639	WP_211904045.1	LysE/ArgO family amino acid transporter	-
GO998_RS15435 (GO998_15440)	maiA	3278280..3278930 (-)	651	WP_013213633.1	maleylacetoacetate isomerase	-
GO998_RS15440 (GO998_15445)	-	3278934..3279635 (-)	702	WP_211904046.1	fumarylacetoacetate hydrolase family protein	-
GO998_RS15445 (GO998_15450)	-	3279786..3280412 (+)	627	WP_013213635.1	ANTAR domain-containing response regulator	-
GO998_RS15450 (GO998_15455)	-	3280689..3281951 (+)	1263	WP_075465415.1	CmpA/NrtA family ABC transporter substrate-binding protein	-

Sequence

Protein

• Length: 373 a.a.
• Molecular weight: 39620.82 Da
• Isoelectric Point: 6.1635

>NTDB_id=406784 GO998_RS15425 WP_211904044.1 3276527..3277648(+) (pilA) [Ralstonia syzygii strain LLRS-1]
MFSFWKKRKAEPQPAAEPVPPAAAPEAVQAPAPVASPAPAPAPVAVPDTPATPAALDMQADDIEAVPTPPVVEQARKGWM
SRLRSGLSKTSKGLTTLFVGVKVDEALFEELETALLMADAGVDATEYLLGELRRRVKAQRIETAEGVKTALRDLLIELLH
PLEKTMVLGREQPTVIMIAGVNGAGKTTSIGKLCKHFQTYGQSVLLAAGDTFRAAAREQLVIWGQRNNVTVVAQESGDPA
AVIFDAVNAARARGIDIVMADTAGRLPTQLHLMEELKKVRRVIGKAMATAPHETLLVIDANTGQNALAQVKAFDDTLGLT
GLIITKLDGTAKGGILAAIARQRPVPVYFIGVGEQVEDLQPFSAREFADALLG

Nucleotide

• Length: 1122 bp

>NTDB_id=406784 GO998_RS15425 WP_211904044.1 3276527..3277648(+) (pilA) [Ralstonia syzygii strain LLRS-1]
ATGTTTAGTTTCTGGAAGAAGCGCAAGGCAGAGCCCCAGCCGGCTGCCGAACCGGTGCCGCCCGCCGCCGCACCTGAAGC
GGTACAGGCTCCGGCCCCGGTTGCCTCCCCCGCACCTGCACCCGCCCCGGTTGCCGTGCCGGATACACCGGCCACGCCGG
CTGCGCTGGACATGCAGGCCGATGATATCGAGGCCGTGCCGACGCCGCCCGTGGTGGAGCAGGCGCGCAAGGGCTGGATG
TCGCGCCTGCGCTCGGGCCTGTCGAAGACCAGCAAGGGCCTGACCACGCTGTTCGTCGGCGTGAAGGTGGACGAGGCGCT
GTTCGAGGAGCTGGAAACCGCGCTGCTGATGGCCGATGCCGGCGTCGATGCCACCGAATACCTGCTGGGCGAACTGCGCC
GCCGTGTGAAAGCCCAGCGCATCGAGACCGCCGAGGGCGTGAAGACCGCGCTGCGCGACCTGCTCATCGAGCTGCTGCAT
CCGTTGGAAAAGACCATGGTGCTCGGCCGCGAGCAGCCGACGGTGATCATGATCGCGGGCGTCAACGGCGCCGGCAAGAC
CACCAGCATCGGCAAGCTGTGCAAGCACTTCCAGACCTACGGGCAATCCGTGCTGCTGGCAGCGGGCGACACGTTCCGTG
CCGCCGCGCGCGAGCAGCTGGTGATCTGGGGCCAGCGCAACAACGTGACCGTGGTGGCGCAGGAATCGGGCGACCCGGCC
GCCGTGATCTTCGACGCGGTGAACGCGGCGCGCGCCCGCGGCATCGATATCGTCATGGCCGACACCGCCGGCCGCCTGCC
GACCCAGCTGCACCTGATGGAAGAACTGAAGAAGGTGCGCCGCGTGATCGGCAAGGCGATGGCGACGGCGCCGCACGAGA
CGTTGCTGGTGATCGACGCCAACACCGGCCAGAACGCGCTGGCGCAGGTGAAAGCCTTCGACGATACGCTCGGCCTGACC
GGCCTGATCATCACCAAGCTGGACGGCACCGCCAAGGGCGGCATCCTGGCCGCCATCGCGCGGCAGCGGCCTGTGCCGGT
GTATTTCATCGGCGTGGGCGAACAGGTGGAAGACCTGCAGCCGTTCTCCGCGCGCGAATTCGCCGACGCGCTGCTGGGCT
AG

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (173-373)

• SRP54-type protein, helical bundle domain (SRP54_N) (92-153)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	62.42	84.182	0.525