Detailed information NTG0406718

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HYI45_RS15105
• Genome accession: NZ_CP058714
• Coordinates: 3146685..3147677 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain M172-1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3141685..3152677

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HYI45_RS15075	ispD	3141746..3142456 (+)	711	WP_000246153.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
HYI45_RS15080	ispF	3142456..3142935 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HYI45_RS15085	truD	3142932..3143981 (+)	1050	WP_000568936.1	tRNA pseudouridine(13) synthase TruD	-
HYI45_RS15090	surE	3143962..3144723 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
HYI45_RS15095	pcm	3144717..3145343 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
HYI45_RS15100	nlpD	3145528..3146622 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
HYI45_RS15105	rpoS	3146685..3147677 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
HYI45_RS15110	-	3147797..3148204 (-)	408	WP_001208071.1	MarR family transcriptional regulator	-
HYI45_RS15115	-	3148351..3148944 (+)	594	WP_000767728.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
HYI45_RS15120	-	3148944..3150371 (+)	1428	WP_000863217.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
HYI45_RS15125	-	3150382..3150618 (+)	237	WP_000562981.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
HYI45_RS15130	pphB	3150660..3151316 (-)	657	WP_001141352.1	protein-serine/threonine phosphatase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=406718 HYI45_RS15105 WP_000081550.1 3146685..3147677(+) (rpoS) [Escherichia coli strain M172-1]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=406718 HYI45_RS15105 WP_000081550.1 3146685..3147677(+) (rpoS) [Escherichia coli strain M172-1]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715