Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   SSU12_RS02450 Genome accession   NC_017619
Coordinates   484409..485143 (+) Length   244 a.a.
NCBI ID   WP_002943067.1    Uniprot ID   A0A0H3MU26
Organism   Streptococcus suis SS12     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 479409..490143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU12_RS02425 (SSU12_0451) - 479909..480217 (-) 309 WP_002938710.1 DUF1827 family protein -
  SSU12_RS02430 (SSU12_0452) - 480272..480733 (-) 462 WP_002938708.1 NUDIX hydrolase -
  SSU12_RS02435 (SSU12_0453) clpE 480919..483147 (-) 2229 WP_011922698.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  SSU12_RS02440 (SSU12_0454) - 483371..483601 (+) 231 WP_002938704.1 DUF1797 family protein -
  SSU12_RS02445 (SSU12_0455) - 483727..484416 (+) 690 WP_002938702.1 amino acid ABC transporter permease -
  SSU12_RS02450 (SSU12_0456) amiE 484409..485143 (+) 735 WP_002943067.1 amino acid ABC transporter ATP-binding protein Regulator
  SSU12_RS02455 (SSU12_0457) - 485273..486121 (+) 849 WP_011922050.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  SSU12_RS02460 (SSU12_0458) - 487570..487863 (+) 294 WP_002938694.1 hypothetical protein -
  SSU12_RS02465 (SSU12_0459) lepB 487853..488455 (+) 603 WP_014636242.1 signal peptidase I -
  SSU12_RS02470 (SSU12_0460) - 488474..488860 (+) 387 WP_011922052.1 hypothetical protein -
  SSU12_RS02475 (SSU12_0461) - 488861..489250 (-) 390 Protein_434 transposase -
  SSU12_RS02480 (SSU12_0462) - 489218..490045 (+) 828 WP_012775002.1 class C sortase -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26881.11 Da        Isoelectric Point: 4.7252

>NTDB_id=40670 SSU12_RS02450 WP_002943067.1 484409..485143(+) (amiE) [Streptococcus suis SS12]
MSNAIISIKDLHKYFGKNEVLKGIDLDIQQGQVVVIIGPSGSGKSTFLRTMNLLEVPTKGTVTFEGVDITDKSNDIFKMR
EKMGMVFQQFNLFPNMTVLDNITLSPIKTKGIAKDEAEKKAKELLEKVGLPDKANAYPQSLSGGQQQRIAIARGLAMDPD
VLLFDEPTSALDPEMVGEVLAVMQDLAKSGMTMVIVTHEMGFAREVADRVIFMDGGVIVEDGTPEEVFEHTKEERTKDFL
SKVL

Nucleotide


Download         Length: 735 bp        

>NTDB_id=40670 SSU12_RS02450 WP_002943067.1 484409..485143(+) (amiE) [Streptococcus suis SS12]
ATGTCTAATGCGATTATTTCTATCAAGGATTTACATAAGTACTTCGGAAAGAATGAGGTTCTAAAAGGAATTGATTTAGA
TATTCAACAAGGTCAGGTGGTCGTTATTATCGGTCCATCAGGGTCAGGGAAATCGACTTTCTTACGTACAATGAACCTCT
TAGAAGTGCCAACCAAGGGAACTGTTACATTTGAAGGTGTTGATATTACTGACAAGTCAAATGATATTTTCAAGATGCGT
GAAAAGATGGGAATGGTTTTTCAACAGTTCAATCTTTTTCCGAATATGACGGTATTAGATAACATTACTTTATCACCTAT
TAAGACAAAGGGAATTGCAAAGGATGAGGCTGAGAAGAAGGCTAAGGAATTACTTGAAAAGGTAGGATTGCCAGATAAGG
CAAATGCCTATCCACAAAGTCTTTCAGGTGGTCAGCAACAACGGATCGCTATTGCACGTGGTCTGGCCATGGACCCAGAT
GTCCTACTTTTTGATGAACCGACCTCTGCACTAGACCCTGAAATGGTTGGTGAAGTTCTTGCTGTAATGCAGGATTTGGC
CAAGTCAGGGATGACCATGGTTATCGTGACTCATGAGATGGGATTTGCGCGTGAGGTAGCTGACAGGGTTATCTTTATGG
ATGGCGGTGTCATCGTGGAGGATGGAACGCCTGAAGAAGTCTTTGAACATACCAAGGAAGAACGGACCAAGGATTTCTTG
TCTAAGGTCTTGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3MU26

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

34.496

100

0.365
  amiE Streptococcus thermophilus LMG 18311

34.496

100

0.365
  amiE Streptococcus thermophilus LMD-9

34.496

100

0.365

Multiple sequence alignment