Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GJB62_RS13115 Genome accession   NZ_CP046703
Coordinates   3191067..3192593 (+) Length   508 a.a.
NCBI ID   WP_114081484.1    Uniprot ID   A0A6P1KNC8
Organism   Nostoc sp. ATCC 53789     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3186067..3197593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJB62_RS13085 (GJB62_12985) - 3186266..3187009 (-) 744 WP_114081488.1 PEP-CTERM sorting domain-containing protein -
  GJB62_RS13090 (GJB62_12990) - 3187648..3188166 (-) 519 WP_114081487.1 DUF456 family protein -
  GJB62_RS13095 (GJB62_12995) - 3188269..3188418 (-) 150 WP_159402512.1 hypothetical protein -
  GJB62_RS13100 (GJB62_13000) - 3188424..3189338 (+) 915 WP_114081486.1 M48 family metallopeptidase -
  GJB62_RS13105 (GJB62_13005) - 3189371..3190003 (-) 633 WP_114081485.1 cofactor assembly of complex C subunit B -
  GJB62_RS13110 (GJB62_13010) rpaB 3190168..3190896 (-) 729 WP_012412029.1 response regulator transcription factor RpaB -
  GJB62_RS13115 (GJB62_13015) radA 3191067..3192593 (+) 1527 WP_114081484.1 DNA repair protein RadA Machinery gene
  GJB62_RS13120 (GJB62_13020) - 3192738..3193466 (+) 729 WP_181852824.1 Uma2 family endonuclease -
  GJB62_RS13125 (GJB62_13025) - 3193792..3194064 (+) 273 WP_114081482.1 hypothetical protein -
  GJB62_RS13130 (GJB62_13030) - 3194310..3195065 (+) 756 WP_309472799.1 WD40 repeat domain-containing serine/threonine-protein kinase -
  GJB62_RS36675 - 3195253..3195426 (+) 174 WP_167755986.1 hypothetical protein -
  GJB62_RS13145 (GJB62_13045) - 3196322..3197572 (+) 1251 WP_114081481.1 serine/threonine-protein kinase -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 54507.35 Da        Isoelectric Point: 4.9309

>NTDB_id=406673 GJB62_RS13115 WP_114081484.1 3191067..3192593(+) (radA) [Nostoc sp. ATCC 53789]
MAKPKTFFTCNECGAESPQWFGKCPACGTYNSLEEQISIQSSVDVPSRGGVSSWQSAQGNGKSHNKPAKARASLTFDQIT
DRQIARWESGYGELDRVLGGGVVPGSMVLIGGDPGIGKSTLLLQVSNQLAQKYRILYVTGEESGQQVKLRASRLGVSKSL
SVVNEENVKVVVDPTLPIDPDSIGADLYVLPETDLEEILREIDSLKPNVAVIDSIQTVFFPALTSAPGSVAQVRECTAAL
MKVAKHEDVTMLIVGHVTKEGAIAGPKVLEHLVDTVLYFEGDRFASHRLLRTVKNRFGATHEIGIFEMVAEGLREVSNPS
ELFLGNRDDPAPGTAIVVACEGTRPIVVELQALVSPTSYPSPRRAGTGVDYNRLVQILAVLEKRVGIPMSKLDSYVASAG
GLNVEEPAVDLGIAIAIVASFRDRIVDPGTVLIGEVGLGGQVRSVSQMELRLKEAAKLGFKRAIVPKGTKFPDLNIEILP
VSKVIDAIIAAIPHQELTADDLEPDEDE

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=406673 GJB62_RS13115 WP_114081484.1 3191067..3192593(+) (radA) [Nostoc sp. ATCC 53789]
ATGGCAAAGCCAAAAACCTTTTTCACTTGTAACGAATGTGGAGCAGAATCGCCCCAGTGGTTTGGTAAGTGTCCAGCTTG
CGGCACTTACAACTCTCTAGAAGAACAAATTTCGATTCAATCCTCAGTAGATGTACCCAGTCGGGGGGGAGTGAGTAGTT
GGCAATCAGCTCAAGGCAATGGCAAATCTCACAATAAACCAGCTAAAGCGCGAGCCTCTTTAACGTTTGATCAAATTACC
GATCGCCAAATCGCTCGCTGGGAGTCTGGTTATGGAGAATTAGATCGGGTACTTGGAGGTGGGGTTGTCCCTGGCTCTAT
GGTGCTGATTGGTGGCGATCCAGGTATTGGTAAATCGACTTTATTGTTGCAAGTATCAAATCAATTAGCACAGAAATACC
GCATCCTTTACGTAACTGGTGAAGAATCGGGACAGCAGGTAAAATTACGAGCTTCTCGTTTGGGAGTATCAAAATCCCTA
AGTGTGGTTAATGAGGAGAATGTTAAGGTAGTAGTAGATCCGACACTACCCATAGACCCTGACAGTATAGGTGCAGATTT
ATATGTACTGCCAGAAACAGATTTAGAAGAAATTTTACGGGAAATAGATTCTCTCAAGCCAAACGTGGCGGTGATTGATA
GTATCCAAACTGTGTTTTTTCCAGCGTTGACTTCTGCACCAGGTTCGGTGGCTCAGGTACGGGAATGTACAGCCGCACTG
ATGAAGGTGGCAAAGCACGAAGATGTCACCATGCTGATTGTGGGACACGTTACCAAAGAAGGAGCGATCGCGGGGCCGAA
AGTCTTAGAACATTTAGTTGATACAGTGTTGTATTTTGAAGGCGATCGCTTTGCTTCCCATCGGTTATTACGCACGGTGA
AAAACCGCTTCGGTGCAACTCACGAAATCGGCATATTTGAAATGGTGGCGGAGGGACTACGGGAAGTCTCCAATCCCTCA
GAGTTATTTTTAGGCAACCGTGACGATCCAGCGCCAGGTACGGCAATTGTCGTGGCTTGCGAAGGCACTCGCCCGATAGT
TGTAGAATTGCAAGCTTTGGTGAGTCCCACCAGCTACCCTTCTCCTCGACGTGCTGGAACAGGGGTAGACTACAACCGCC
TAGTGCAAATTCTCGCCGTCTTAGAAAAACGGGTGGGAATTCCCATGTCCAAGTTAGATTCCTACGTTGCTTCTGCGGGT
GGGTTGAATGTGGAAGAACCGGCAGTAGATTTAGGAATTGCGATCGCAATTGTAGCTAGTTTCCGCGATCGCATCGTCGA
TCCCGGTACAGTCTTAATCGGTGAAGTTGGGTTAGGTGGACAAGTGCGATCGGTTTCCCAAATGGAACTGCGATTGAAAG
AAGCTGCTAAGTTGGGATTTAAAAGAGCGATCGTGCCAAAAGGGACAAAATTTCCTGACTTAAATATTGAAATATTACCC
GTCTCTAAAGTAATAGATGCGATTATCGCCGCTATCCCCCATCAGGAATTGACAGCCGACGATTTAGAACCCGATGAAGA
TGAGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(402-467)

KaiC (ATPase)

(90-296)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6P1KNC8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.607

97.244

0.492
  radA Streptococcus mitis SK321

45.825

96.654

0.443
  radA Streptococcus mitis NCTC 12261

47.335

92.323

0.437
  radA Streptococcus pneumoniae Rx1

47.335

92.323

0.437
  radA Streptococcus pneumoniae D39

47.335

92.323

0.437
  radA Streptococcus pneumoniae R6

47.335

92.323

0.437
  radA Streptococcus pneumoniae TIGR4

47.335

92.323

0.437

Multiple sequence alignment