Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HYI45_RS02930 Genome accession   NZ_CP058714
Coordinates   579818..580423 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain M172-1     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 574818..585423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYI45_RS02910 aes 574959..575918 (+) 960 WP_000801813.1 acetyl esterase -
  HYI45_RS02915 hemH 575915..576877 (-) 963 WP_001250112.1 ferrochelatase -
  HYI45_RS02920 adk 577009..577653 (-) 645 WP_001220233.1 adenylate kinase -
  HYI45_RS02925 htpG 577834..579708 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  HYI45_RS02930 recR 579818..580423 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  HYI45_RS02935 ybaB 580423..580752 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  HYI45_RS02940 dnaX 580805..582736 (-) 1932 WP_000122015.1 DNA polymerase III subunit gamma/tau -
  HYI45_RS02945 apt 582865..583416 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  HYI45_RS02950 ybaN 583569..583946 (-) 378 WP_001188905.1 DUF454 family protein -
  HYI45_RS02955 priC 584016..584543 (+) 528 WP_000844860.1 primosomal replication protein N'' -
  HYI45_RS02960 rsmS 584557..584718 (+) 162 WP_000051142.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=406669 HYI45_RS02930 WP_001195025.1 579818..580423(-) (recR) [Escherichia coli strain M172-1]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=406669 HYI45_RS02930 WP_001195025.1 579818..580423(-) (recR) [Escherichia coli strain M172-1]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment