Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   HZS88_RS22985 Genome accession   NZ_CP058709
Coordinates   4636113..4637537 (-) Length   474 a.a.
NCBI ID   WP_000132558.1    Uniprot ID   -
Organism   Escherichia coli strain S163-2     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4631113..4642537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZS88_RS22955 yeeZ 4631169..4631993 (+) 825 WP_000754725.1 SDR family oxidoreductase -
  HZS88_RS22960 yeeY 4632039..4632968 (+) 930 Protein_4497 LysR substrate-binding domain-containing protein -
  HZS88_RS22965 yoeI 4633183..4633245 (+) 63 WP_010723108.1 membrane protein YoeI -
  HZS88_RS22970 plaP 4633235..4634593 (+) 1359 WP_024198437.1 putrescine/proton symporter PlaP -
  HZS88_RS22975 tsuA 4634772..4635829 (+) 1058 Protein_4500 thiosulfate utilization transporter TsuA/YeeE -
  HZS88_RS22980 tsuB 4635843..4636070 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  HZS88_RS22985 sbcB 4636113..4637537 (-) 1425 WP_000132558.1 exodeoxyribonuclease I Machinery gene
  HZS88_RS22990 - 4637719..4638897 (+) 1179 WP_239804028.1 site-specific integrase -
  HZS88_RS22995 - 4638878..4639069 (-) 192 WP_000132739.1 AlpA family phage regulatory protein -
  HZS88_RS23000 - 4639149..4639493 (-) 345 WP_001281192.1 hypothetical protein -
  HZS88_RS23005 - 4639520..4639687 (-) 168 WP_000545737.1 hypothetical protein -
  HZS88_RS23010 - 4639846..4640123 (-) 278 Protein_4507 DUF4752 family protein -
  HZS88_RS25445 - 4640123..4640737 (-) 615 WP_345773985.1 DUF551 domain-containing protein -
  HZS88_RS23020 - 4640765..4640896 (-) 132 Protein_4509 DUF551 domain-containing protein -
  HZS88_RS23025 - 4640900..4641331 (-) 432 WP_239804029.1 hypothetical protein -
  HZS88_RS23030 - 4641331..4641873 (-) 543 WP_239804030.1 ead/Ea22-like family protein -
  HZS88_RS23035 - 4641870..4642142 (-) 273 WP_001549480.1 hypothetical protein -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54355.59 Da        Isoelectric Point: 5.3476

>NTDB_id=406660 HZS88_RS22985 WP_000132558.1 4636113..4637537(-) (sbcB) [Escherichia coli strain S163-2]
MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENE
AAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGL
PSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRG
NTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDAD
RLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDK
RIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=406660 HZS88_RS22985 WP_000132558.1 4636113..4637537(-) (sbcB) [Escherichia coli strain S163-2]
ATGACAGACACAGATAAACAACCTACCTTCCTCTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCGCCC
TGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCGCGG
ATGACTATTTGCCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAACGAA
GCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTTCGA
CGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCT
GGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGTCTA
CCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGTGTA
CGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATAAAC
ACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGCGGC
AATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGACAT
TTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAACGTTTATATACCGCAAAAACCGATCTTGGCGATAACGCCG
CCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCCGAC
CGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGTGGT
GGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTGACG
CAGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGATAAA
CGAATTGAAAAACTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTGGCT
GGAGCACCGCCGCCAGGTCTTCACGCCCGAGTTTTTGCAGGGCTATGCTGATGAATTGCAGATGCTGGCACAACAATATG
CCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(211-471)

Exonuclease (RNase_T)

(12-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

59.149

99.156

0.586