Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HALHY_RS11980 Genome accession   NC_015510
Coordinates   3076574..3077953 (-) Length   459 a.a.
NCBI ID   WP_013764808.1    Uniprot ID   F4KVD3
Organism   Haliscomenobacter hydrossis DSM 1100     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3071574..3082953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HALHY_RS11955 (Halhy_2379) - 3071862..3072449 (+) 588 WP_013764804.1 hypothetical protein -
  HALHY_RS11960 (Halhy_2380) - 3072563..3073324 (-) 762 WP_044233661.1 T9SS type A sorting domain-containing protein -
  HALHY_RS11965 (Halhy_2381) - 3073508..3074404 (+) 897 WP_148270297.1 DMT family transporter -
  HALHY_RS11970 (Halhy_2382) asnS 3074603..3076036 (-) 1434 WP_013764806.1 asparagine--tRNA ligase -
  HALHY_RS11975 (Halhy_2383) - 3076086..3076478 (-) 393 WP_013764807.1 thiol-disulfide oxidoreductase DCC family protein -
  HALHY_RS11980 (Halhy_2384) radA 3076574..3077953 (-) 1380 WP_013764808.1 DNA repair protein RadA Machinery gene
  HALHY_RS11985 (Halhy_2385) - 3078330..3079379 (+) 1050 WP_013764809.1 alpha/beta hydrolase -
  HALHY_RS11990 (Halhy_2386) - 3079472..3079780 (-) 309 WP_013764810.1 rhodanese-like domain-containing protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 50511.26 Da        Isoelectric Point: 5.7841

>NTDB_id=40664 HALHY_RS11980 WP_013764808.1 3076574..3077953(-) (radA) [Haliscomenobacter hydrossis DSM 1100]
MAKVKKIFACTECGATSPKWVGKCPACGEWNTYQEEIIFKETPQEAAKSAWKPKHGPMDGPKPVALTDISASNVMRLVTP
DNELNRVLGGGIVPGSLILIGGQPGIGKSTLLLQVTLQLKNKVLYVSGEESEEQIKMRADRLTYSQDHCYILTETNVSKI
IAFANELEPDLVIIDSIQTLQSPYIESTPGSISQVRECAGDLQRFAKTTHIPVFIIGHITKDGSIAGPKLLEHIVDAVLQ
FEGDQHYTYRILRTVKNRFGSTDEMGIYEMQATGLREVSNPSELLLSQKEEELSGSAVAATMEGMRPMLIETQALVSKAV
YGTPQRSATGFDLRRLSMLLAVLEKRGGMPFGMNDVFLNLAGGIRVDDPAIDLAIVSALISSLEDVAVPSNICFSAEVGL
SGEIRAVNRIEQRIQEAERLGFKEIYFSKYNLKGLDQKRFGIKLRPISKIEELYQALFV

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=40664 HALHY_RS11980 WP_013764808.1 3076574..3077953(-) (radA) [Haliscomenobacter hydrossis DSM 1100]
GTGGCTAAAGTCAAAAAAATATTCGCTTGTACGGAATGTGGTGCTACCTCTCCCAAATGGGTAGGCAAATGCCCCGCCTG
TGGAGAGTGGAATACCTATCAGGAAGAGATCATTTTTAAAGAAACCCCGCAAGAAGCTGCAAAAAGCGCCTGGAAACCCA
AGCATGGACCCATGGACGGCCCCAAACCCGTTGCCCTTACGGACATCAGTGCCAGTAATGTAATGCGCCTGGTAACCCCC
GACAATGAATTGAATCGGGTCTTGGGGGGAGGAATTGTACCCGGCTCCTTGATCCTCATTGGAGGCCAACCAGGGATTGG
TAAATCCACTTTGCTGTTGCAGGTTACGTTGCAACTCAAAAACAAGGTATTGTACGTCTCCGGCGAAGAAAGTGAGGAGC
AAATCAAAATGCGCGCCGATCGATTGACCTATTCTCAAGACCATTGCTACATCCTGACCGAAACGAACGTCAGCAAAATC
ATTGCTTTCGCCAATGAATTAGAACCGGATTTGGTCATCATTGACTCCATCCAAACTTTACAGTCTCCATACATTGAGTC
CACGCCGGGAAGTATTTCCCAGGTGCGGGAGTGTGCGGGGGATTTGCAACGTTTTGCCAAAACTACCCATATTCCCGTGT
TTATCATTGGACACATCACCAAAGATGGATCGATCGCCGGGCCTAAACTTTTGGAACACATCGTCGATGCTGTATTGCAA
TTTGAAGGCGATCAGCACTATACTTACCGCATTTTGCGTACCGTCAAAAATCGCTTTGGTTCAACCGATGAGATGGGGAT
TTATGAGATGCAAGCCACTGGTTTACGCGAAGTATCCAATCCTTCCGAGTTGTTGCTTTCCCAAAAAGAAGAGGAATTAA
GTGGCAGCGCCGTGGCTGCCACCATGGAAGGCATGCGCCCAATGCTGATCGAGACCCAGGCCTTGGTCAGCAAAGCCGTA
TACGGTACCCCCCAACGCTCGGCCACTGGTTTTGACCTGCGCCGCCTGAGCATGTTGTTGGCCGTATTGGAAAAAAGAGG
CGGGATGCCTTTTGGCATGAACGATGTTTTTCTCAATCTTGCCGGGGGCATCCGGGTAGATGACCCCGCCATTGATCTGG
CCATCGTGAGTGCGTTGATCTCTTCTTTAGAGGATGTTGCGGTACCCAGCAACATTTGTTTTTCCGCCGAAGTAGGTCTA
TCCGGTGAAATCCGGGCCGTCAATCGCATCGAGCAACGTATCCAGGAAGCGGAAAGGCTGGGTTTTAAAGAAATTTACTT
CTCCAAATATAACCTAAAAGGGTTAGATCAAAAACGCTTCGGCATCAAATTGCGCCCAATCAGCAAGATTGAGGAACTGT
ATCAAGCCTTATTTGTTTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(71-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(345-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F4KVD3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.868

99.129

0.514
  radA Streptococcus pneumoniae Rx1

49.348

100

0.495
  radA Streptococcus pneumoniae D39

49.348

100

0.495
  radA Streptococcus pneumoniae R6

49.348

100

0.495
  radA Streptococcus pneumoniae TIGR4

49.348

100

0.495
  radA Streptococcus mitis SK321

49.348

100

0.495
  radA Streptococcus mitis NCTC 12261

49.13

100

0.492

Multiple sequence alignment