Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   GPJ68_RS08590 Genome accession   NZ_CP046673
Coordinates   1825557..1826171 (+) Length   204 a.a.
NCBI ID   WP_016152483.1    Uniprot ID   R8X084
Organism   Citrobacter sp. 172116965     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1820557..1831171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPJ68_RS08570 (GPJ68_08590) - 1820918..1822678 (-) 1761 WP_016156136.1 Lon protease family protein -
  GPJ68_RS08575 (GPJ68_08595) matP 1822864..1823316 (+) 453 WP_016152480.1 macrodomain Ter protein MatP -
  GPJ68_RS08580 (GPJ68_08600) ompA 1823415..1824473 (-) 1059 WP_016156137.1 porin OmpA -
  GPJ68_RS08585 (GPJ68_08605) sulA 1824831..1825340 (-) 510 WP_019076414.1 SOS-induced cell division inhibitor SulA -
  GPJ68_RS08590 (GPJ68_08610) sxy/tfoX 1825557..1826171 (+) 615 WP_016152483.1 TfoX/Sxy family DNA transformation protein Regulator
  GPJ68_RS08595 (GPJ68_08615) yccS 1826149..1828302 (-) 2154 WP_049283246.1 YccS family putative transporter -
  GPJ68_RS08600 (GPJ68_08620) - 1828321..1828767 (-) 447 WP_016152485.1 YccF domain-containing protein -
  GPJ68_RS08605 (GPJ68_08625) helD 1828893..1830947 (+) 2055 WP_180837241.1 DNA helicase IV -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23168.52 Da        Isoelectric Point: 8.6113

>NTDB_id=406626 GPJ68_RS08590 WP_016152483.1 1825557..1826171(+) (sxy/tfoX) [Citrobacter sp. 172116965]
MKEKSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVASGELYLRACEQSAQYCVKNSPVWLTFIKRGRPVVLN
YYQVNDTLWQNQQQLVSLSQFSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTLRSLGAQMCWLKLRQNN
PALTVKILYALEGAVDGVHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=406626 GPJ68_RS08590 WP_016152483.1 1825557..1826171(+) (sxy/tfoX) [Citrobacter sp. 172116965]
ATGAAAGAAAAGTCTTATGCAAGAATCTATAAATCACAAGAATATCTGGCTTCTCTGGGAACAATTCACTACCGCTCACT
GTTTGGCGGCTATAGTCTGACGGTTGGTGATACGGTCTTTGCCATGGTTGCCAGCGGTGAGTTATATCTTCGCGCCTGTG
AGCAGAGCGCCCAGTACTGTGTAAAAAATTCTCCTGTCTGGCTAACATTTATCAAGCGCGGGCGTCCGGTTGTACTCAAT
TATTACCAGGTGAACGATACCCTGTGGCAAAACCAGCAGCAGTTAGTATCGCTATCACAATTTTCACTCGATGCAGCCGT
TAAGGAAAAACAGAGTCGCTTTGCACAACATCGCCTGCGGGAATTACCGAATATGACGTTTCATCTGGAGACCTTGCTAA
ATGAAGCAGGAATTAAGGATGAGGGGACATTGCGATCGCTGGGAGCTCAGATGTGCTGGTTGAAACTTCGGCAAAATAAC
CCTGCCTTAACGGTAAAAATACTCTATGCCCTTGAAGGGGCGGTTGACGGGGTGCATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R8X084

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

69.154

98.529

0.681

Multiple sequence alignment