Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HZS88_RS08270 Genome accession   NZ_CP058709
Coordinates   1626386..1626991 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain S163-2     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1621386..1631991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZS88_RS08250 aes 1621423..1622382 (+) 960 WP_000801850.1 acetyl esterase -
  HZS88_RS08255 hemH 1622379..1623341 (-) 963 WP_001250088.1 ferrochelatase -
  HZS88_RS08260 adk 1623577..1624221 (-) 645 WP_001220233.1 adenylate kinase -
  HZS88_RS08265 htpG 1624402..1626276 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  HZS88_RS08270 recR 1626386..1626991 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  HZS88_RS08275 ybaB 1626991..1627320 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  HZS88_RS08280 dnaX 1627373..1629304 (-) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  HZS88_RS08285 apt 1629433..1629984 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  HZS88_RS08290 ybaN 1630137..1630514 (-) 378 WP_001188905.1 DUF454 family protein -
  HZS88_RS08295 priC 1630584..1631111 (+) 528 WP_000844874.1 primosomal replication protein N'' -
  HZS88_RS08300 rsmS 1631125..1631286 (+) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=406600 HZS88_RS08270 WP_001195025.1 1626386..1626991(-) (recR) [Escherichia coli strain S163-2]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=406600 HZS88_RS08270 WP_001195025.1 1626386..1626991(-) (recR) [Escherichia coli strain S163-2]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443