Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   HYQ63_RS37510 Genome accession   NZ_CP058693
Coordinates   8744447..8745262 (+) Length   271 a.a.
NCBI ID   WP_179938134.1    Uniprot ID   -
Organism   Streptomyces sp. Rer75     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 8739447..8750262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYQ63_RS37495 (HYQ63_37495) - 8740790..8742499 (+) 1710 WP_257232396.1 ABC transporter substrate-binding protein -
  HYQ63_RS37500 (HYQ63_37500) - 8742499..8743461 (+) 963 WP_179938132.1 ABC transporter permease -
  HYQ63_RS37505 (HYQ63_37505) - 8743461..8744450 (+) 990 WP_179938133.1 ABC transporter permease -
  HYQ63_RS37510 (HYQ63_37510) amiE 8744447..8745262 (+) 816 WP_179938134.1 ABC transporter ATP-binding protein Regulator
  HYQ63_RS37515 (HYQ63_37515) - 8745259..8746170 (+) 912 WP_306664867.1 ATP-binding cassette domain-containing protein -
  HYQ63_RS37520 (HYQ63_37520) - 8746163..8747611 (+) 1449 WP_179938135.1 aminopeptidase P family protein -
  HYQ63_RS37525 (HYQ63_37525) - 8747635..8748351 (+) 717 WP_179938136.1 GntR family transcriptional regulator -
  HYQ63_RS37530 (HYQ63_37530) - 8748414..8749421 (+) 1008 WP_179938137.1 ADP-ribosylglycohydrolase family protein -

Sequence

Protein


Download         Length: 271 a.a.        Molecular weight: 29221.36 Da        Isoelectric Point: 5.6594

>NTDB_id=406567 HYQ63_RS37510 WP_179938134.1 8744447..8745262(+) (amiE) [Streptomyces sp. Rer75]
MSARPGLLVVEDLTVTLPTTRGPVDVVKGVSFTVDRDDTLGIVGESGSGKSMTSLAIMGLLPRGATATGSVRLDGEELLG
RSDRELRRIRGDGISMVFQDPLSSLNPYYTVGLQIEEAYRAHRGGSRKAARAVAVEALTQVGIADAERRAGHYPHQFSGG
QRQRVMIAMALVCSPSLLIADEPTTALDVTVQAQILRLLAGLQERTGTGMVLITHDLAVVSSLARRILVMREGDPVEYGE
AERIFSDPHHPYTRALLESVPRIDDDTEVPL

Nucleotide


Download         Length: 816 bp        

>NTDB_id=406567 HYQ63_RS37510 WP_179938134.1 8744447..8745262(+) (amiE) [Streptomyces sp. Rer75]
ATGAGTGCACGGCCGGGGCTCCTCGTCGTGGAAGACCTCACCGTCACCCTGCCCACCACCCGCGGCCCCGTCGACGTCGT
CAAGGGTGTGTCCTTCACCGTCGACAGGGACGACACCCTCGGCATCGTCGGGGAGTCGGGCTCCGGCAAGTCCATGACCA
GCCTCGCCATCATGGGGCTGCTGCCGCGCGGCGCGACGGCCACCGGCAGCGTCCGCCTCGACGGCGAGGAACTGCTCGGC
CGCTCCGACCGCGAGCTGCGCCGGATCCGGGGCGACGGGATCTCCATGGTGTTCCAGGACCCGCTGTCCTCGCTCAACCC
CTATTACACGGTGGGCCTCCAGATCGAGGAGGCCTACCGGGCCCACCGCGGCGGCTCGCGGAAGGCCGCCCGGGCCGTGG
CCGTCGAGGCGCTGACACAGGTGGGCATCGCCGACGCCGAGCGGCGCGCGGGCCACTACCCGCACCAGTTCTCCGGCGGG
CAGCGCCAGCGCGTCATGATCGCCATGGCGCTGGTCTGCTCCCCGTCCCTGCTGATCGCGGACGAGCCGACGACCGCGCT
CGACGTCACCGTCCAGGCGCAGATCCTGCGGCTGCTCGCCGGGCTCCAGGAGCGGACCGGCACCGGGATGGTCCTCATCA
CCCACGATCTGGCCGTCGTCAGCTCCCTCGCGCGGCGGATCCTGGTGATGCGCGAAGGCGACCCGGTCGAGTACGGGGAG
GCCGAGCGGATCTTCTCCGACCCGCACCATCCGTACACGCGGGCGCTGCTGGAGAGCGTGCCGCGCATCGACGACGACAC
GGAGGTCCCGCTGTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(28-184)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(236-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

44.867

97.048

0.435
  amiE Streptococcus thermophilus LMD-9

44.867

97.048

0.435
  amiE Streptococcus salivarius strain HSISS4

45.038

96.679

0.435
  oppD Streptococcus mutans UA159

45.174

95.572

0.432
  amiF Streptococcus thermophilus LMG 18311

39.464

96.31

0.38
  amiF Streptococcus thermophilus LMD-9

39.08

96.31

0.376