Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   HYQ63_RS23735 Genome accession   NZ_CP058693
Coordinates   5544507..5546405 (+) Length   632 a.a.
NCBI ID   WP_179940425.1    Uniprot ID   -
Organism   Streptomyces sp. Rer75     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5539507..5551405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYQ63_RS46080 - 5539898..5539978 (-) 81 WP_350962106.1 putative leader peptide -
  HYQ63_RS23715 (HYQ63_23715) - 5540211..5540897 (-) 687 WP_179935766.1 DUF2993 domain-containing protein -
  HYQ63_RS23720 (HYQ63_23720) - 5541014..5542282 (-) 1269 WP_179940423.1 hypothetical protein -
  HYQ63_RS23725 (HYQ63_23725) - 5542294..5542569 (-) 276 WP_179935767.1 MoaD/ThiS family protein -
  HYQ63_RS23730 (HYQ63_23730) rcrP 5542693..5544438 (+) 1746 WP_179935768.1 ABC transporter ATP-binding protein Regulator
  HYQ63_RS23735 (HYQ63_23735) rcrQ 5544507..5546405 (+) 1899 WP_179940425.1 ABC transporter ATP-binding protein Regulator
  HYQ63_RS23740 (HYQ63_23740) - 5546484..5547356 (-) 873 WP_218929578.1 alpha/beta hydrolase -
  HYQ63_RS23745 (HYQ63_23745) - 5547786..5548613 (+) 828 WP_179935769.1 response regulator transcription factor -
  HYQ63_RS23750 (HYQ63_23750) - 5548637..5549659 (+) 1023 WP_123100013.1 LacI family DNA-binding transcriptional regulator -
  HYQ63_RS23755 (HYQ63_23755) - 5549752..5550843 (+) 1092 WP_179935770.1 S1C family serine protease -

Sequence

Protein


Download         Length: 632 a.a.        Molecular weight: 67897.83 Da        Isoelectric Point: 5.2690

>NTDB_id=406532 HYQ63_RS23735 WP_179940425.1 5544507..5546405(+) (rcrQ) [Streptomyces sp. Rer75]
MGGQPVERSMDFRGSGRRLLGALRPERGIAFAVLALCTVSITLTVLGPKVLGHATDLIFAGIVGRQLPEGATKAEAVQHL
RDSGQGTVADMVASMNVTPGQGIDFGAVGTVLLWALGLYVVASLLNLIQARVATNVVQRAVFRLREDVEQKLARLPLSYF
DKQPRGEVLSRATNDIDNIQQTLQQTLSQIMASLLTLVGVLAMMFWISPLLALVALVTVPVSVLVATRVGKRAQPQFVQQ
WKTTGRLNAHIEEMYTGHALVKVFGRERESAEVFRAQNEKLYEAGFRAQFISGLIQPAMTFIGNLNYVLVAVVGGLRVAS
GALSIGDVQAFVQYSRQFSQPLTQVASMANMVQSGVASAERVFELLDAEEQTPDPEGPVGPRTVLGQVEFEDVSFRYQSD
TPLIEGLSLSVSPGQTVAIVGPTGAGKTTLVNLLMRFYEVSGGRITLDGVDAATMPREELRSHIGMVLQDTWLFGGTIAE
NIAYGSEGASHEAIVEAAKATHVDRFVRTLPDGYDTVIDEEGTGVSVGEKQLITIARAFLSGPSILVLDEATSSVDTRTE
VLIQHAMASLRTGRTSFVIAHRLSTIRDADVILVMESGRIVEQGSHDSLVAAGGAYARLYAAQFAEPVAEPE

Nucleotide


Download         Length: 1899 bp        

>NTDB_id=406532 HYQ63_RS23735 WP_179940425.1 5544507..5546405(+) (rcrQ) [Streptomyces sp. Rer75]
ATGGGCGGCCAGCCCGTCGAGCGGTCCATGGACTTCCGCGGCTCCGGCCGCCGTCTGCTGGGCGCCCTGCGCCCCGAGCG
CGGCATCGCCTTCGCCGTGCTCGCCCTGTGCACGGTCAGCATCACGCTGACGGTGCTGGGCCCCAAGGTGCTCGGCCACG
CCACCGACCTGATCTTCGCGGGCATCGTGGGACGGCAGCTCCCGGAGGGCGCCACCAAGGCCGAGGCCGTCCAGCACCTG
CGCGACAGCGGCCAGGGCACCGTGGCCGACATGGTCGCCTCGATGAACGTGACGCCCGGCCAGGGCATCGACTTCGGGGC
CGTCGGCACCGTCCTGCTGTGGGCGCTGGGCCTGTACGTCGTGGCCTCGCTCCTCAACCTGATCCAGGCGCGGGTGGCCA
CGAACGTCGTCCAGCGCGCGGTCTTCCGGCTGCGCGAGGACGTCGAACAGAAGCTGGCGCGGCTGCCGCTGTCGTACTTC
GACAAGCAGCCGCGCGGCGAGGTGCTGTCGCGCGCCACCAACGACATCGACAACATCCAGCAGACGCTCCAGCAGACCCT
CAGCCAGATCATGGCCTCGCTGCTGACCCTCGTCGGCGTGCTGGCCATGATGTTCTGGATCTCGCCGCTGCTGGCGCTGG
TGGCGCTGGTCACCGTCCCGGTGTCGGTGCTGGTCGCGACGCGCGTCGGCAAGCGGGCCCAGCCCCAGTTCGTCCAGCAG
TGGAAGACCACGGGGCGGCTCAACGCCCACATCGAGGAGATGTACACCGGCCACGCCCTGGTGAAGGTCTTCGGACGGGA
GCGGGAGTCCGCCGAGGTCTTCCGCGCGCAGAACGAGAAGCTGTACGAGGCGGGCTTCCGCGCCCAGTTCATCTCCGGGC
TCATCCAGCCCGCCATGACGTTCATCGGGAACCTCAACTACGTGCTGGTCGCCGTGGTCGGCGGGCTGCGGGTGGCGAGC
GGGGCGCTGTCGATCGGCGACGTCCAGGCGTTCGTCCAGTACTCCCGGCAGTTCAGCCAGCCGCTCACCCAGGTGGCGTC
CATGGCCAACATGGTCCAGTCGGGCGTCGCCTCCGCCGAGCGGGTCTTCGAGCTGCTGGACGCGGAGGAGCAGACCCCGG
ACCCGGAGGGCCCGGTGGGGCCGCGGACCGTGCTCGGCCAGGTCGAGTTCGAGGACGTCTCCTTCCGCTACCAGTCCGAC
ACGCCCCTCATCGAGGGGCTCTCGCTGTCGGTGAGCCCCGGCCAGACCGTGGCCATCGTCGGCCCGACCGGCGCCGGGAA
GACCACCCTGGTCAATCTGCTGATGCGGTTCTACGAGGTCAGCGGGGGCCGCATCACGCTCGACGGCGTCGACGCCGCCA
CCATGCCGCGCGAGGAGCTGCGCTCCCACATCGGCATGGTGCTCCAGGACACCTGGCTGTTCGGCGGCACGATCGCGGAG
AACATCGCGTACGGCTCGGAGGGCGCCTCCCACGAGGCGATCGTGGAGGCGGCGAAGGCCACCCACGTGGACCGCTTCGT
GCGCACCCTGCCGGACGGCTACGACACGGTGATCGACGAGGAGGGCACAGGCGTCTCCGTCGGCGAGAAGCAGCTGATCA
CCATCGCCCGCGCATTCCTCTCCGGCCCGTCCATCCTGGTGCTGGACGAGGCGACCAGCTCCGTCGACACCCGCACCGAG
GTCCTCATCCAGCACGCGATGGCCTCGCTGCGCACCGGCCGCACCAGCTTCGTGATCGCCCACCGGCTGTCCACGATCCG
CGACGCGGACGTGATCCTGGTGATGGAGTCGGGCCGCATCGTGGAGCAGGGCAGCCACGACTCCCTGGTGGCGGCCGGGG
GTGCGTACGCCCGGCTGTACGCGGCCCAGTTCGCGGAGCCGGTGGCCGAGCCGGAGTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(49-342)

ABC transporter (ABC_tran)

(405-553)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

41.582

93.987

0.391