Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   HYQ63_RS23730 Genome accession   NZ_CP058693
Coordinates   5542693..5544438 (+) Length   581 a.a.
NCBI ID   WP_179935768.1    Uniprot ID   -
Organism   Streptomyces sp. Rer75     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5537693..5549438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYQ63_RS23695 (HYQ63_23695) - 5537774..5538136 (+) 363 WP_009716112.1 DsrE family protein -
  HYQ63_RS23700 (HYQ63_23700) - 5538191..5538448 (-) 258 WP_179935764.1 DUF3099 domain-containing protein -
  HYQ63_RS23705 (HYQ63_23705) - 5538578..5538865 (-) 288 WP_009716110.1 DUF1416 domain-containing protein -
  HYQ63_RS23710 (HYQ63_23710) - 5538901..5539740 (-) 840 WP_179935765.1 sulfurtransferase -
  HYQ63_RS46080 - 5539898..5539978 (-) 81 WP_350962106.1 putative leader peptide -
  HYQ63_RS23715 (HYQ63_23715) - 5540211..5540897 (-) 687 WP_179935766.1 DUF2993 domain-containing protein -
  HYQ63_RS23720 (HYQ63_23720) - 5541014..5542282 (-) 1269 WP_179940423.1 hypothetical protein -
  HYQ63_RS23725 (HYQ63_23725) - 5542294..5542569 (-) 276 WP_179935767.1 MoaD/ThiS family protein -
  HYQ63_RS23730 (HYQ63_23730) rcrP 5542693..5544438 (+) 1746 WP_179935768.1 ABC transporter ATP-binding protein Regulator
  HYQ63_RS23735 (HYQ63_23735) rcrQ 5544507..5546405 (+) 1899 WP_179940425.1 ABC transporter ATP-binding protein Regulator
  HYQ63_RS23740 (HYQ63_23740) - 5546484..5547356 (-) 873 WP_218929578.1 alpha/beta hydrolase -
  HYQ63_RS23745 (HYQ63_23745) - 5547786..5548613 (+) 828 WP_179935769.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 581 a.a.        Molecular weight: 62878.12 Da        Isoelectric Point: 6.6546

>NTDB_id=406531 HYQ63_RS23730 WP_179935768.1 5542693..5544438(+) (rcrP) [Streptomyces sp. Rer75]
MLVRLIRAYLRPYTRTINVIVLLQLVQTVATLYLPTLNADIIDDGVVKGDTGYILVVGALMIAVTLVQIVCAIGAVYFGA
RTAMALGRDIRADVFDRVQSFSAREMGRFGAPSLITRTTNDVQQVQMLCLMSFTLMVSAPIMCVGGIAMALNQDVPLSGL
LLLIVPVLGITVTLIVRRMRPLFRDVQERIDTVNRVLREQITGIRVIRAFVRDGHERKRFTAANTALMDVSLRAGRLMSL
MFPTVMLVVNLSSVAVVWAGGHRIDSGGMQIGALTAFISYLMQILTSVMMATFMFMMVPRAEVCAERVQEVLDTATSVVP
PLRPVAPRASADGGRGLLELRGVEFRYPGAEEPVLRDVSLTAHPGRTTAVIGSTGSGKSTLLGLVPRLFDATDGSVHLDG
VDVRDLDPAVMTRSIGLVPQKPYLFSGTVASNLRYGNPDASDEELWKALETAQARDFVEAMEGGLEAPIAQGGSNVSGGQ
RQRLAIARALVLRPSVYLFDDSFSALDYATDARLRAALADETGNATVVIVAQRVSTIRGADRIVVLDEGRVVGSGTHDEL
MADNQTYREIVLSQLTEQEAA

Nucleotide


Download         Length: 1746 bp        

>NTDB_id=406531 HYQ63_RS23730 WP_179935768.1 5542693..5544438(+) (rcrP) [Streptomyces sp. Rer75]
GTGCTGGTCCGACTCATACGGGCGTATCTGCGGCCCTACACCCGAACGATCAACGTGATCGTGCTATTGCAGCTCGTACA
GACAGTGGCCACCCTCTATCTGCCCACCCTCAACGCCGACATCATCGACGACGGAGTCGTCAAGGGCGACACCGGCTACA
TCCTCGTCGTCGGCGCATTGATGATCGCCGTCACCCTGGTGCAGATCGTGTGCGCCATCGGCGCCGTCTACTTCGGCGCC
CGCACCGCCATGGCGCTCGGCCGGGACATCCGCGCCGACGTCTTCGACCGGGTGCAGTCCTTCTCCGCCCGCGAGATGGG
CCGGTTCGGGGCGCCCTCGCTGATCACCCGCACCACCAACGACGTCCAGCAGGTACAGATGCTGTGCCTGATGTCCTTCA
CGCTGATGGTGTCGGCGCCCATCATGTGCGTCGGCGGCATCGCCATGGCGCTCAATCAGGACGTGCCGCTGTCCGGGCTG
CTGCTGCTCATCGTGCCGGTGCTGGGCATCACCGTCACCCTCATCGTCCGCAGGATGCGCCCGCTGTTCCGGGACGTCCA
GGAGCGCATCGACACCGTCAACCGGGTGCTGCGCGAGCAGATCACCGGCATCCGGGTGATCCGGGCCTTCGTCCGCGACG
GCCATGAGCGGAAGCGGTTCACCGCCGCGAACACCGCGCTGATGGACGTGTCGCTGCGGGCCGGGCGGCTGATGTCGCTG
ATGTTCCCCACCGTGATGCTGGTGGTGAACCTGTCCAGCGTCGCCGTGGTGTGGGCGGGCGGGCACCGCATCGACAGCGG
CGGGATGCAGATCGGCGCGCTGACCGCATTCATCAGCTATCTCATGCAGATCCTGACGTCGGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTGTGCGCCGAGCGCGTCCAGGAGGTGCTGGACACCGCGACCAGCGTCGTTCCG
CCGCTGCGGCCGGTCGCGCCCCGGGCGTCCGCCGACGGCGGCCGCGGGCTGCTGGAGCTGCGGGGCGTGGAGTTCCGCTA
CCCGGGCGCCGAGGAGCCCGTGCTGCGCGACGTCTCGCTGACCGCCCACCCCGGCCGGACCACCGCCGTCATCGGCTCCA
CCGGCAGCGGCAAGTCCACCCTCCTCGGGCTGGTGCCCCGGCTGTTCGACGCGACCGACGGCAGCGTCCACCTCGACGGC
GTGGACGTGCGCGACCTCGACCCCGCGGTGATGACCCGGTCCATCGGCCTCGTACCGCAGAAGCCGTACCTCTTCTCCGG
CACCGTCGCCTCCAACTTGCGGTACGGAAACCCGGACGCGAGCGACGAGGAGCTGTGGAAGGCCCTGGAGACCGCGCAGG
CGCGGGACTTCGTCGAGGCCATGGAGGGCGGGCTGGAGGCGCCCATCGCCCAGGGCGGCTCCAATGTCTCCGGCGGGCAG
CGGCAGCGGCTGGCGATCGCCCGCGCCCTGGTGCTGAGGCCGTCCGTCTACCTCTTCGACGACTCATTCTCGGCGCTCGA
CTACGCCACCGACGCCCGGCTGCGGGCGGCGCTGGCGGACGAGACCGGGAACGCGACCGTCGTCATCGTCGCCCAGCGGG
TGTCCACCATCCGCGGCGCCGACCGGATCGTGGTCCTCGACGAGGGGCGCGTCGTCGGCAGCGGCACCCACGACGAGCTG
ATGGCCGACAACCAGACCTACCGGGAGATCGTGCTGTCCCAGCTCACCGAGCAGGAGGCCGCATGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(19-288)

ABC transporter (ABC_tran)

(355-502)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.711

95.353

0.379