Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   GPA07_RS17640 Genome accession   NZ_CP046653
Coordinates   3436938..3437366 (+) Length   142 a.a.
NCBI ID   WP_071168113.1    Uniprot ID   A0AAC9IEY7
Organism   Bacillus sp. ms-22     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3431938..3442366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPA07_RS17630 (GPA07_17630) - 3432526..3434511 (-) 1986 WP_008359503.1 hydantoinase B/oxoprolinase family protein -
  GPA07_RS17635 (GPA07_17635) - 3434501..3436570 (-) 2070 WP_157293075.1 hydantoinase/oxoprolinase family protein -
  GPA07_RS17640 (GPA07_17640) nucA/comI 3436938..3437366 (+) 429 WP_071168113.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  GPA07_RS17645 (GPA07_17645) - 3437493..3439190 (+) 1698 WP_071168114.1 methyl-accepting chemotaxis protein -
  GPA07_RS17650 (GPA07_17650) comJ 3439329..3439718 (+) 390 WP_008359494.1 competence protein ComJ -
  GPA07_RS17655 (GPA07_17655) - 3439720..3440526 (-) 807 WP_157293076.1 AAC(3) family N-acetyltransferase -
  GPA07_RS17660 (GPA07_17660) - 3440554..3441018 (-) 465 WP_083381094.1 Lrp/AsnC family transcriptional regulator -
  GPA07_RS17665 (GPA07_17665) - 3441087..3441851 (+) 765 WP_008359488.1 MBL fold metallo-hydrolase -
  GPA07_RS17670 (GPA07_17670) - 3441903..3442235 (-) 333 WP_008359487.1 YckD family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15975.80 Da        Isoelectric Point: 4.9997

>NTDB_id=406456 GPA07_RS17640 WP_071168113.1 3436938..3437366(+) (nucA/comI) [Bacillus sp. ms-22]
MKLLKTILLLLLIVIGVATGYIQLEQSKQETTDSSYDKTIHFPSDRYPETAKHIEEAIDEGHSSICTIDRENSDEQRDRS
LHGIPTKHGYDRDEWPMAMCKEGGTGASVKYVRPSDNRGAGSWVSHQLSDDPDGTRIQFIID

Nucleotide


Download         Length: 429 bp        

>NTDB_id=406456 GPA07_RS17640 WP_071168113.1 3436938..3437366(+) (nucA/comI) [Bacillus sp. ms-22]
ATGAAACTTCTTAAAACCATTCTCCTGCTTTTATTGATTGTCATTGGTGTAGCAACAGGCTATATCCAGCTGGAGCAAAG
TAAACAAGAGACAACAGACTCTTCTTATGACAAAACCATTCACTTTCCATCAGATCGTTATCCAGAAACAGCCAAGCACA
TAGAAGAGGCAATTGATGAAGGTCATTCTTCCATTTGTACGATTGATCGAGAAAATAGTGATGAGCAGAGAGACCGATCA
CTGCATGGCATCCCAACAAAGCATGGATATGATCGAGACGAATGGCCAATGGCAATGTGTAAAGAAGGAGGAACAGGCGC
TTCTGTGAAATATGTGCGTCCATCAGATAACAGAGGCGCAGGCTCTTGGGTAAGTCATCAATTATCCGATGATCCTGATG
GCACAAGAATCCAATTTATTATTGATTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(46-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

61.983

85.211

0.528

Multiple sequence alignment