Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   GPA07_RS14640 Genome accession   NZ_CP046653
Coordinates   2804269..2804847 (-) Length   192 a.a.
NCBI ID   WP_157292872.1    Uniprot ID   -
Organism   Bacillus sp. ms-22     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2799269..2809847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPA07_RS14615 (GPA07_14615) - 2799581..2801020 (+) 1440 WP_157292870.1 PLP-dependent aminotransferase family protein -
  GPA07_RS14620 (GPA07_14620) - 2801052..2801534 (-) 483 WP_157292871.1 hypothetical protein -
  GPA07_RS14625 (GPA07_14625) - 2801823..2802098 (-) 276 Protein_2886 cupin domain-containing protein -
  GPA07_RS14630 (GPA07_14630) - 2802171..2803280 (-) 1110 WP_008359056.1 threonine synthase -
  GPA07_RS14635 (GPA07_14635) - 2803305..2803976 (-) 672 WP_008359054.1 helix-turn-helix transcriptional regulator -
  GPA07_RS18875 - 2803998..2804120 (-) 123 Protein_2889 D-TA family PLP-dependent enzyme -
  GPA07_RS14640 (GPA07_14640) comK 2804269..2804847 (-) 579 WP_157292872.1 competence protein ComK Regulator
  GPA07_RS14645 (GPA07_14645) - 2805137..2805373 (+) 237 WP_008348804.1 IDEAL domain-containing protein -
  GPA07_RS14650 (GPA07_14650) - 2805430..2806290 (-) 861 WP_008359049.1 SDR family oxidoreductase -
  GPA07_RS14655 (GPA07_14655) - 2806432..2807964 (+) 1533 WP_157292873.1 FAD-dependent oxidoreductase -
  GPA07_RS14660 (GPA07_14660) - 2808057..2809352 (+) 1296 WP_008359045.1 globin-coupled sensor protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22322.31 Da        Isoelectric Point: 8.7996

>NTDB_id=406450 GPA07_RS14640 WP_157292872.1 2804269..2804847(-) (comK) [Bacillus sp. ms-22]
MSGISETPLDSYVINQTTMAVLPVEEGKRVYSKVIERETSFYVELKPLNIIERSCRFFGSSYAGRKAGTYEVTGISHKPP
IVIDSSNHLYFFPTYSSNRPQCGWISHKYIHTFQESSLGDTVVTFTNEQSVKLDVSYKSFESQVHRTAYLRTKFQDRLDG
GLPKKQEFMLYPKEQQLNLVYDFILRELRNRY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=406450 GPA07_RS14640 WP_157292872.1 2804269..2804847(-) (comK) [Bacillus sp. ms-22]
GTGTCAGGAATTAGCGAAACACCTTTAGATTCATACGTCATTAATCAAACAACAATGGCGGTCCTTCCGGTTGAAGAAGG
AAAACGAGTATATTCAAAAGTTATTGAAAGAGAGACAAGCTTTTATGTTGAATTAAAGCCTCTGAACATTATAGAACGCA
GCTGTAGGTTCTTTGGCTCAAGCTATGCAGGCAGAAAAGCGGGAACATATGAAGTAACAGGAATTTCCCATAAGCCTCCC
ATCGTGATTGACTCATCCAATCATTTGTATTTCTTCCCAACCTATTCATCCAACCGCCCCCAGTGCGGATGGATTTCCCA
CAAATACATTCATACCTTTCAAGAATCGTCCCTCGGAGACACGGTTGTCACTTTTACCAATGAGCAATCGGTCAAACTGG
ACGTCTCATATAAATCATTTGAAAGTCAGGTGCACCGCACAGCATATCTTCGAACGAAATTTCAAGACCGTCTTGATGGA
GGTCTTCCTAAGAAACAAGAATTTATGCTGTATCCAAAGGAACAGCAGCTCAACCTTGTGTATGACTTTATTTTAAGAGA
ACTTCGTAATCGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

60.938

100

0.609

Multiple sequence alignment