Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpC   Type   Regulator
Locus tag   GPA07_RS13005 Genome accession   NZ_CP046653
Coordinates   2501363..2503465 (+) Length   700 a.a.
NCBI ID   WP_008361749.1    Uniprot ID   A0AAC9IFP2
Organism   Bacillus sp. ms-22     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 2496363..2508465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPA07_RS12970 (GPA07_12970) - 2496670..2496858 (+) 189 WP_003211747.1 DUF2187 family protein -
  GPA07_RS12975 (GPA07_12975) - 2496983..2497201 (-) 219 WP_071167706.1 hypothetical protein -
  GPA07_RS12980 (GPA07_12980) queF 2497463..2497960 (-) 498 WP_003211403.1 preQ(1) synthase -
  GPA07_RS12985 (GPA07_12985) queE 2497976..2498707 (-) 732 WP_157292648.1 7-carboxy-7-deazaguanine synthase QueE -
  GPA07_RS12990 (GPA07_12990) queD 2498704..2499141 (-) 438 WP_157292650.1 6-carboxytetrahydropterin synthase QueD -
  GPA07_RS12995 (GPA07_12995) queC 2499142..2499798 (-) 657 WP_071167709.1 7-cyano-7-deazaguanine synthase QueC -
  GPA07_RS13000 (GPA07_13000) - 2500074..2501117 (-) 1044 WP_157292652.1 hypothetical protein -
  GPA07_RS13005 (GPA07_13005) clpC 2501363..2503465 (+) 2103 WP_008361749.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  GPA07_RS13010 (GPA07_13010) - 2503497..2503694 (+) 198 WP_008361747.1 hypothetical protein -
  GPA07_RS13015 (GPA07_13015) motA 2503842..2504636 (+) 795 WP_008361746.1 flagellar motor stator protein MotA -
  GPA07_RS13020 (GPA07_13020) motB 2504629..2505393 (+) 765 WP_008361744.1 flagellar motor protein MotB -
  GPA07_RS13025 (GPA07_13025) - 2505626..2506081 (-) 456 WP_003211701.1 MarR family transcriptional regulator -
  GPA07_RS13030 (GPA07_13030) - 2506287..2507786 (+) 1500 WP_071167711.1 ATP-binding protein -
  GPA07_RS13035 (GPA07_13035) - 2507837..2508079 (-) 243 WP_008361487.1 aspartyl-phosphate phosphatase Spo0E family protein -

Sequence

Protein


Download         Length: 700 a.a.        Molecular weight: 77861.54 Da        Isoelectric Point: 5.2842

>NTDB_id=406439 GPA07_RS13005 WP_008361749.1 2501363..2503465(+) (clpC) [Bacillus sp. ms-22]
MRCQQCQVNEATIRLNMQVNSSRSQMVLCEDCYTSLMEQSKMKMGPSLFGGHSFFSQPTGHAPIGEQPKQKGLLDELGQN
LTDGANAGLIDPVIGRDEEVARVIEILNRRNKNNPVLIGEPGVGKTAIAEGLALKIASGDVPNKLKNKQIYLLDVSSLVA
NTGVRGQFEERMKQLINELKSRKNVILFVDEIHLLVGAGSAEGSMDAGNILKPALARGELQLVGATTLKEYRQIEKDAAL
ERRFQPVMVHEPTQDEAIEILKGIQDKYEAYHGVTYSDEAIKACVQLSSRYIQDRHLPDKAIDLMDEAGSKANLSLDAAS
EDELTNRLAQIAAEKQAALKEEQYEKAAKLRDEEEAIEARLQNKSDDKKHVVTAEDIQSIVEQKTGIPVGKLQADEQTKM
KEIDVRLKARVIGQEHAVEKVAKAVKRSRAGLKSKHRPTGSFLFVGPTGVGKTELSKTLAEELFGSKDAIIRLDMSEYME
KHSVSKIIGSPPGYVGHDEAGQLTEKVRRKPYSIILLDEIEKAHPDVQHMFLQIMEDGRLTDSQGRTVSFKDTVIIMTSN
AGSTDKTVKVGFQSDKEEAIEEQSLIDSLSAYFKPEFLNRFDSIIQFNSLDKDDLVKIVDLLLQELAEQLKEQNLTVHVT
NEAKEKIAELGYHPAFGARPLRRTIQEHVEDQMTDILLEEEHLSGFTVDVEHDEIVVRKG

Nucleotide


Download         Length: 2103 bp        

>NTDB_id=406439 GPA07_RS13005 WP_008361749.1 2501363..2503465(+) (clpC) [Bacillus sp. ms-22]
ATGCGTTGTCAACAATGTCAAGTAAATGAGGCGACTATTCGCCTGAATATGCAAGTGAATTCGTCCCGCAGCCAAATGGT
TTTATGTGAGGACTGCTACACCTCTTTGATGGAGCAGTCAAAAATGAAAATGGGACCTAGCCTGTTCGGAGGACATTCAT
TCTTTTCTCAGCCAACAGGACATGCCCCAATCGGGGAGCAGCCTAAACAAAAAGGCTTACTCGATGAACTTGGCCAAAAC
TTAACTGATGGCGCAAATGCTGGCCTGATTGATCCAGTCATTGGCCGTGATGAAGAAGTCGCAAGAGTCATTGAGATTTT
AAATAGAAGAAATAAAAACAATCCTGTCCTCATTGGTGAACCTGGTGTTGGTAAAACAGCTATTGCCGAAGGACTTGCAC
TAAAAATTGCAAGTGGCGATGTACCAAATAAATTAAAGAACAAACAAATCTATTTATTAGATGTCTCCTCACTTGTGGCG
AACACAGGTGTACGCGGACAATTTGAGGAACGAATGAAGCAATTAATCAACGAATTGAAAAGCCGTAAAAATGTCATCTT
ATTCGTAGATGAAATCCATCTTCTTGTAGGCGCAGGGTCTGCAGAAGGATCAATGGATGCCGGAAATATTTTAAAACCAG
CCCTTGCACGAGGCGAGCTGCAGCTAGTCGGTGCGACTACATTAAAAGAGTATCGTCAAATTGAAAAAGATGCCGCACTT
GAACGACGCTTCCAGCCAGTCATGGTTCATGAGCCAACACAAGATGAAGCGATTGAGATATTAAAAGGCATTCAAGATAA
GTATGAGGCCTATCATGGCGTCACTTATTCTGACGAAGCCATTAAGGCATGCGTTCAGTTATCTTCGCGGTATATTCAAG
ACCGCCACTTGCCAGATAAAGCCATTGATTTAATGGATGAAGCGGGTTCAAAAGCGAACCTCTCTCTTGATGCAGCAAGT
GAAGATGAATTAACAAACCGTCTTGCCCAAATTGCCGCTGAAAAACAAGCTGCTTTAAAAGAAGAACAATATGAAAAGGC
AGCGAAGCTCAGGGATGAAGAAGAAGCGATAGAAGCGAGACTTCAAAACAAATCAGATGACAAAAAGCATGTCGTCACAG
CTGAGGATATCCAGTCCATTGTAGAACAAAAAACAGGAATCCCGGTTGGCAAACTGCAAGCAGACGAACAAACAAAAATG
AAAGAAATCGACGTCCGCTTAAAAGCACGAGTCATTGGTCAGGAACATGCGGTTGAAAAAGTAGCAAAAGCCGTCAAAAG
AAGTAGAGCCGGTTTAAAATCGAAACATAGACCAACAGGCTCCTTCCTTTTCGTTGGACCGACAGGCGTCGGTAAAACCG
AATTGTCCAAAACATTAGCGGAAGAATTATTTGGCTCAAAAGACGCGATCATTCGTTTGGACATGAGTGAATATATGGAG
AAACACTCTGTATCCAAAATCATCGGTTCTCCTCCTGGATACGTTGGTCATGACGAAGCAGGACAACTGACTGAAAAGGT
TCGCAGAAAACCATATAGCATCATTTTGCTCGATGAAATCGAAAAAGCGCACCCTGATGTCCAGCACATGTTCCTTCAAA
TCATGGAGGATGGCCGTCTAACAGACAGCCAGGGCAGAACAGTCAGCTTTAAAGACACAGTCATCATCATGACAAGTAAC
GCAGGCAGCACAGATAAAACGGTGAAAGTCGGCTTCCAGTCTGACAAGGAAGAAGCCATTGAGGAACAATCACTGATTGA
TTCACTCAGCGCCTATTTCAAACCTGAGTTCTTGAACCGTTTTGACAGCATCATTCAGTTTAACTCATTAGACAAAGACG
ATTTAGTTAAAATTGTTGATCTTTTGCTTCAAGAACTAGCTGAGCAGCTAAAAGAACAAAATCTAACAGTTCACGTCACA
AACGAAGCGAAAGAAAAAATCGCAGAGCTTGGATACCACCCTGCATTTGGTGCTCGTCCATTACGGAGAACGATTCAAGA
GCATGTCGAAGATCAAATGACGGACATCTTACTTGAAGAAGAACATCTTTCTGGATTTACAGTCGATGTTGAACATGACG
AAATTGTTGTGAGAAAGGGATAA

Domains

Predicted by InterproScan.

AAA lid domain (AAA_lid_9)

(253-353)

ATPase family associated with various cellular activities (AAA) (AAA)

(116-246)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(610-689)

AAA domain (Cdc48 subfamily) (AAA_2)

(437-604)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Lactococcus lactis subsp. cremoris KW2

56.967

100

0.596
  clpE Streptococcus mutans UA159

57.479

100

0.593
  clpE Streptococcus pneumoniae Rx1

55.387

100

0.573
  clpE Streptococcus pneumoniae D39

55.387

100

0.573
  clpE Streptococcus pneumoniae R6

55.387

100

0.573
  clpE Streptococcus pneumoniae TIGR4

55.387

100

0.573
  clpC Bacillus subtilis subsp. subtilis str. 168

52.246

95.429

0.499
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

47.17

90.857

0.429
  clpC Streptococcus thermophilus LMD-9

45.669

90.714

0.414
  clpC Streptococcus thermophilus LMG 18311

45.512

90.714

0.413
  clpC Streptococcus pneumoniae TIGR4

44.637

90.571

0.404
  clpC Streptococcus pneumoniae Rx1

44.833

89.857

0.403
  clpC Streptococcus pneumoniae D39

44.833

89.857

0.403
  clpC Streptococcus mutans UA159

43.81

90

0.394

Multiple sequence alignment