Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   GPA07_RS12845 Genome accession   NZ_CP046653
Coordinates   2466084..2466545 (+) Length   153 a.a.
NCBI ID   WP_008356877.1    Uniprot ID   -
Organism   Bacillus sp. ms-22     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 2461084..2471545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPA07_RS12810 (GPA07_12810) - 2461492..2461650 (+) 159 WP_157292634.1 hypothetical protein -
  GPA07_RS12815 (GPA07_12815) - 2461998..2463131 (-) 1134 WP_157292637.1 Rap family tetratricopeptide repeat protein -
  GPA07_RS12820 (GPA07_12820) - 2463475..2463957 (+) 483 WP_008356882.1 hypothetical protein -
  GPA07_RS12825 (GPA07_12825) - 2464012..2464584 (+) 573 WP_157292639.1 hypothetical protein -
  GPA07_RS12830 (GPA07_12830) - 2464646..2464887 (-) 242 Protein_2518 peptidoglycan-binding domain-containing protein -
  GPA07_RS19060 - 2465002..2465115 (-) 114 Protein_2519 hypothetical protein -
  GPA07_RS12845 (GPA07_12845) kre 2466084..2466545 (+) 462 WP_008356877.1 YkyB family protein Regulator
  GPA07_RS12850 (GPA07_12850) - 2466581..2467489 (-) 909 WP_157292640.1 chemotaxis protein -
  GPA07_RS12855 (GPA07_12855) - 2467563..2468873 (-) 1311 WP_157292642.1 MFS transporter -
  GPA07_RS12860 (GPA07_12860) - 2469000..2469539 (-) 540 WP_157292643.1 RDD family protein -
  GPA07_RS18660 - 2469841..2469993 (+) 153 WP_008356868.1 hypothetical protein -
  GPA07_RS12865 (GPA07_12865) - 2470058..2470942 (-) 885 WP_008356865.1 cation diffusion facilitator family transporter -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17711.30 Da        Isoelectric Point: 10.2452

>NTDB_id=406438 GPA07_RS12845 WP_008356877.1 2466084..2466545(+) (kre) [Bacillus sp. ms-22]
MDDYAHTKDIEPTAENIAKAIYTVNRHAKTAPNPKFLYLLKKRALQKLLQEGKGRKVGLHFSNNPKYSQQQSDVLIEIGD
YYFHLPPTKEDFEFLPHLGNLNQSYRNPKANMSLNRAKQILQTYVGLKEKPAATKQKSHYTKPVFKRLGESYF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=406438 GPA07_RS12845 WP_008356877.1 2466084..2466545(+) (kre) [Bacillus sp. ms-22]
ATGGACGATTATGCTCATACTAAAGACATAGAACCTACAGCAGAAAACATCGCAAAAGCCATTTATACTGTTAACCGCCA
TGCTAAAACCGCACCAAATCCCAAGTTTCTTTATCTTTTAAAAAAACGTGCGCTGCAAAAACTATTGCAAGAAGGTAAAG
GAAGAAAAGTGGGCCTACATTTCTCTAATAATCCCAAATATAGTCAACAACAGTCCGACGTGCTGATTGAAATTGGAGAT
TATTATTTTCATCTGCCACCAACCAAAGAAGACTTCGAATTTTTGCCACACTTAGGCAATTTAAATCAATCATATCGCAA
CCCAAAAGCGAATATGTCATTAAATCGAGCAAAACAAATACTTCAAACGTATGTCGGTTTAAAAGAAAAACCCGCCGCCA
CAAAACAAAAATCACATTATACAAAGCCCGTCTTCAAACGACTAGGAGAAAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

75.974

100

0.765

Multiple sequence alignment