Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   GPA07_RS12590 Genome accession   NZ_CP046653
Coordinates   2423120..2423398 (-) Length   92 a.a.
NCBI ID   WP_008356980.1    Uniprot ID   A0AAC9IDN4
Organism   Bacillus sp. ms-22     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2418120..2428398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPA07_RS12570 (GPA07_12570) ade 2418129..2419859 (-) 1731 WP_157292617.1 adenine deaminase -
  GPA07_RS12575 (GPA07_12575) - 2420120..2420788 (-) 669 WP_008356985.1 TrkA family potassium uptake protein -
  GPA07_RS12580 (GPA07_12580) - 2420826..2421659 (-) 834 WP_008356984.1 gamma-glutamylcyclotransferase -
  GPA07_RS12585 (GPA07_12585) - 2421678..2422973 (-) 1296 WP_157292619.1 ATP-binding protein -
  GPA07_RS12590 (GPA07_12590) abrB 2423120..2423398 (-) 279 WP_008356980.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  GPA07_RS12595 (GPA07_12595) mreBH 2423675..2424682 (+) 1008 WP_008356978.1 rod-share determining protein MreBH -
  GPA07_RS18650 - 2424757..2424888 (+) 132 WP_003210922.1 protein YkpC -
  GPA07_RS12600 (GPA07_12600) - 2424995..2426227 (+) 1233 WP_157292621.1 aminopeptidase -
  GPA07_RS12605 (GPA07_12605) - 2426265..2427884 (-) 1620 WP_008356968.1 ATP-binding cassette domain-containing protein -
  GPA07_RS12610 (GPA07_12610) - 2428029..2428304 (+) 276 WP_008345136.1 hypothetical protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10247.93 Da        Isoelectric Point: 4.6535

>NTDB_id=406436 GPA07_RS12590 WP_008356980.1 2423120..2423398(-) (abrB) [Bacillus sp. ms-22]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSMEFFIDGDKIVLKKYQPQGVCLMTGEITSENHEYGNGAITLSAEGAE
LLLKELQEALQQ

Nucleotide


Download         Length: 279 bp        

>NTDB_id=406436 GPA07_RS12590 WP_008356980.1 2423120..2423398(-) (abrB) [Bacillus sp. ms-22]
TTGAAATCTATCGGAGTCGTAAGAAAAGTAGATGAACTAGGACGTATTGTGATGCCAATCGAATTGAGAAGAGCACTTGA
TATCGCTATTAAAGACAGTATGGAATTTTTTATAGATGGAGATAAAATCGTCTTGAAAAAATATCAGCCTCAAGGCGTTT
GTCTCATGACGGGTGAGATTACTTCAGAGAACCATGAATATGGAAATGGTGCCATTACATTAAGCGCTGAAGGCGCAGAA
CTACTGCTAAAAGAGCTTCAAGAGGCCCTTCAACAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.348

100

0.543

Multiple sequence alignment