Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   GPA07_RS11760 Genome accession   NZ_CP046653
Coordinates   2256747..2257649 (-) Length   300 a.a.
NCBI ID   WP_157292565.1    Uniprot ID   -
Organism   Bacillus sp. ms-22     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2251747..2262649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPA07_RS11745 (GPA07_11745) xerC 2252122..2253039 (-) 918 WP_008354500.1 tyrosine recombinase XerC -
  GPA07_RS11750 (GPA07_11750) trmFO 2253102..2254406 (-) 1305 WP_008354501.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  GPA07_RS11755 (GPA07_11755) topA 2254477..2256552 (-) 2076 WP_008354502.1 type I DNA topoisomerase -
  GPA07_RS11760 (GPA07_11760) dprA 2256747..2257649 (-) 903 WP_157292565.1 DNA-processing protein DprA Machinery gene
  GPA07_RS11765 (GPA07_11765) sucD 2257717..2258619 (-) 903 WP_008354504.1 succinate--CoA ligase subunit alpha -
  GPA07_RS11770 (GPA07_11770) sucC 2258642..2259802 (-) 1161 WP_008354505.1 ADP-forming succinate--CoA ligase subunit beta -
  GPA07_RS11775 (GPA07_11775) - 2259979..2260254 (-) 276 WP_008354506.1 FlhB-like flagellar biosynthesis protein -
  GPA07_RS11780 (GPA07_11780) - 2260251..2261981 (-) 1731 WP_157292566.1 glycosyltransferase -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34129.44 Da        Isoelectric Point: 8.8768

>NTDB_id=406435 GPA07_RS11760 WP_157292565.1 2256747..2257649(-) (dprA) [Bacillus sp. ms-22]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETHHFKQDRSLQKIDFTRLKQAEENEFPIFQHIVQAYVKQNIHM
IPITSSLYPSTLKHIYDPPPVLFLKGNITYLNEEKSLGVVGTRVPSSYGEACVKKIVGELVEENWTIVSGLAKGIDGLAH
KECIRKKGKTIGVVAGGFQHLYPKEHVQMAQYMGEHHLLLSEHPPYIKPEKWHFPMRNRLISALTKGTIVIQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDSNSTGPARLIQQGAKLVHSTKDILEEFFFQGVQYTEPS

Nucleotide


Download         Length: 903 bp        

>NTDB_id=406435 GPA07_RS11760 WP_157292565.1 2256747..2257649(-) (dprA) [Bacillus sp. ms-22]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCTTTGTTAACAAAATGGTGGAA
AGTCGATCCTGAGTTATATATAAATGAAGAAACACATCATTTCAAACAGGATCGATCATTACAAAAGATTGACTTTACCC
GCTTAAAACAAGCAGAAGAAAATGAATTCCCCATTTTTCAACACATCGTTCAAGCCTATGTAAAGCAAAACATTCACATG
ATTCCCATCACATCATCCTTATATCCCAGCACACTAAAACACATTTATGATCCTCCCCCTGTGTTATTCCTAAAAGGAAA
CATAACATATTTAAATGAAGAAAAAAGTTTAGGTGTAGTAGGTACTCGTGTACCGTCCTCTTATGGAGAAGCATGTGTGA
AAAAAATCGTTGGTGAACTTGTAGAGGAAAATTGGACGATTGTCAGTGGTTTAGCAAAAGGAATTGATGGACTTGCACAT
AAGGAGTGTATCAGGAAAAAGGGGAAAACCATTGGAGTTGTAGCTGGTGGATTTCAACATCTATATCCAAAAGAACATGT
GCAAATGGCTCAATACATGGGAGAACATCATTTGCTTTTGTCAGAGCATCCGCCTTATATTAAACCAGAAAAGTGGCATT
TTCCGATGAGAAATCGATTAATTAGTGCTTTGACAAAAGGAACCATCGTGATCCAGTGCAAAGAAAAGAGCGGTTCGCTT
ATTACAGCCTATCAGGCACTGGAGCAAGGAAAAGAAGTGTTTGCTGTTGCAGGATCGATCTTTGATTCTAATTCCACAGG
TCCAGCTAGACTTATTCAACAAGGAGCCAAGCTTGTTCATTCTACGAAAGATATTTTAGAGGAATTCTTCTTCCAGGGCG
TTCAATATACTGAACCCTCATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

54.861

96

0.527
  dprA Lactococcus lactis subsp. cremoris KW2

39.31

96.667

0.38

Multiple sequence alignment