Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   GPA07_RS09710 Genome accession   NZ_CP046653
Coordinates   1845325..1845936 (-) Length   203 a.a.
NCBI ID   WP_071169020.1    Uniprot ID   -
Organism   Bacillus sp. ms-22     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1840325..1850936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPA07_RS09690 (GPA07_09690) - 1840664..1841368 (+) 705 WP_008356803.1 DnaD domain-containing protein -
  GPA07_RS09695 (GPA07_09695) nth 1841386..1842048 (+) 663 WP_157292456.1 endonuclease III -
  GPA07_RS09700 (GPA07_09700) - 1842045..1842554 (+) 510 WP_071169018.1 YpoC family protein -
  GPA07_RS09705 (GPA07_09705) - 1842591..1845281 (-) 2691 WP_071169019.1 PBP1A family penicillin-binding protein -
  GPA07_RS09710 (GPA07_09710) recU 1845325..1845936 (-) 612 WP_071169020.1 Holliday junction resolvase RecU Machinery gene
  GPA07_RS09715 (GPA07_09715) - 1845983..1846939 (+) 957 WP_157292457.1 DUF2515 domain-containing protein -
  GPA07_RS09720 (GPA07_09720) sspM 1846963..1847067 (-) 105 WP_008356814.1 acid-soluble spore protein SspM -
  GPA07_RS09725 (GPA07_09725) - 1847264..1847497 (+) 234 WP_232532035.1 DUF5446 family protein -
  GPA07_RS09730 (GPA07_09730) - 1847547..1847927 (+) 381 WP_232532036.1 YppE family protein -
  GPA07_RS09735 (GPA07_09735) - 1848035..1848484 (+) 450 WP_071169023.1 YppG family protein -
  GPA07_RS09740 (GPA07_09740) - 1848503..1848922 (-) 420 WP_157292458.1 Hsp20/alpha crystallin family protein -
  GPA07_RS09745 (GPA07_09745) - 1849091..1849597 (+) 507 WP_157292459.1 PTS glucose transporter subunit IIA -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 23420.52 Da        Isoelectric Point: 9.4228

>NTDB_id=406431 GPA07_RS09710 WP_071169020.1 1845325..1845936(-) (recU) [Bacillus sp. ms-22]
MIRYPNGKSYQPIQQIGTKKRVRGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLSASDLFFFWERQQ
RNGRKSISKDELMEAGHLMTLGYSPRIDYIKVVETLHFSDESQ

Nucleotide


Download         Length: 612 bp        

>NTDB_id=406431 GPA07_RS09710 WP_071169020.1 1845325..1845936(-) (recU) [Bacillus sp. ms-22]
ATGATTCGGTATCCAAACGGAAAATCGTATCAGCCCATTCAACAAATTGGGACAAAAAAAAGAGTCAGGGGCGAATCCTC
TTATAGTAATCGCGGGATGACGCTTGAAGCTGACTTAAATGAAACCAACCAGTACTATTTGGTCAATGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCAGTTCAAATTGTCAATGTGGACTATCCGAAAAGAAGTGCCGCTGTCATTAAAGAAGCTTAT
TTTAAACAATCATCTACGACAGACTATAACGGGGTGTACAAAGGGCGGTATATCGACTTTGAAGCAAAGGAAACCAAAAG
CACCACCTCGTTTCCGCTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTTGTTATTATATCCGCATTTGGCTCCGTTTATTATTTATCCGCTTCTGACCTCTTCTTCTTTTGGGAGCGGCAGCAG
CGAAATGGGCGCAAATCCATTAGTAAAGACGAATTAATGGAAGCTGGCCACTTAATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGAAAGTCAGTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

72.772

99.507

0.724

Multiple sequence alignment