Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   GPA07_RS08715 Genome accession   NZ_CP046653
Coordinates   1661775..1663508 (+) Length   577 a.a.
NCBI ID   WP_071168952.1    Uniprot ID   -
Organism   Bacillus sp. ms-22     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1656775..1668508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPA07_RS08690 (GPA07_08690) - 1657085..1657345 (+) 261 WP_003215880.1 exodeoxyribonuclease VII small subunit -
  GPA07_RS08695 (GPA07_08695) - 1657335..1658225 (+) 891 WP_071168949.1 farnesyl diphosphate synthase -
  GPA07_RS08700 (GPA07_08700) dxs 1658377..1660278 (+) 1902 WP_008358603.1 1-deoxy-D-xylulose-5-phosphate synthase -
  GPA07_RS08705 (GPA07_08705) - 1660275..1661129 (+) 855 WP_157292357.1 TlyA family RNA methyltransferase -
  GPA07_RS08710 (GPA07_08710) argR 1661291..1661740 (+) 450 WP_008358598.1 transcriptional regulator ArgR -
  GPA07_RS08715 (GPA07_08715) recN 1661775..1663508 (+) 1734 WP_071168952.1 DNA repair protein RecN Machinery gene
  GPA07_RS08720 (GPA07_08720) spoIVB 1663707..1664984 (+) 1278 WP_071168953.1 SpoIVB peptidase -
  GPA07_RS08725 (GPA07_08725) spo0A 1665269..1666072 (+) 804 WP_157292359.1 sporulation transcription factor Spo0A Regulator
  GPA07_RS08730 (GPA07_08730) - 1666529..1667629 (+) 1101 WP_008358589.1 Rap family tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 64658.54 Da        Isoelectric Point: 4.7136

>NTDB_id=406429 GPA07_RS08715 WP_071168952.1 1661775..1663508(+) (recN) [Bacillus sp. ms-22]
MLAELTIKNFAIIEELTVSFEKGLTVLTGETGAGKSIMIDAVSLLVGGRGSSEFVRYGEKKAELEGLFLVPADHPVFALC
EEQGIDASDEMMILRRDINQSGKSICRINGKLVTISLLREIGRLLLDIHGQHDNQLLMEDENHLHLLDQFGAEEIAPALM
QYQEAYDQYMKTAQKLKQLSENEQEMVHRLDLLQFQLEEIEAAQLEPGEDEKLQEERHQISNFEKIYSSLQNAYNALRNE
QGGLDWVGMASSELEQVSDINEDLKQLSEQVSNSYYLLEDSTFQMRSMLDQLEFDPARLDFIESRLNEMKQLKRKYGTTV
EEILEYAAKIEEEIDQIQHRDSHLQTLKDKLDALSRDALLEALNVSELRKKWAKKLAKQIQAELKDLYMEKSSFDTAFSV
RYAPFGSTDCPLLDGKPVQLGRNGIDQAQFVISTNPGEPMKSLSKVASGGEISRVMLAVKSIFSAKQEVTSIIFDEVDTG
VSGRVAQAIAEKIYKVAAGSQVLCITHLPQVAAMADTHLFISKRSKAGRTLTSVKPLSNEEKVSEIGRMIAGVEVTELTK
QHAKELLHQANDVKTTG

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=406429 GPA07_RS08715 WP_071168952.1 1661775..1663508(+) (recN) [Bacillus sp. ms-22]
GTGTTAGCAGAACTAACCATTAAAAACTTTGCAATCATTGAAGAGTTAACGGTTTCATTTGAAAAAGGACTCACAGTTCT
AACCGGGGAAACAGGTGCCGGAAAATCAATTATGATTGATGCTGTCTCACTTCTTGTAGGGGGAAGAGGATCATCTGAAT
TTGTCCGCTACGGTGAAAAAAAAGCAGAGCTGGAAGGGCTTTTTCTTGTACCAGCAGATCATCCTGTGTTTGCTTTATGC
GAAGAGCAGGGGATTGACGCATCGGATGAAATGATGATTCTTCGCCGGGATATCAATCAAAGCGGGAAAAGCATCTGCCG
CATTAATGGTAAGCTTGTCACCATCTCTCTTCTGCGAGAAATTGGCCGGCTGTTGCTCGATATACATGGACAGCATGATA
ATCAGCTATTGATGGAGGATGAAAATCATCTGCATCTGCTCGATCAATTCGGGGCAGAAGAAATTGCACCTGCTCTCATG
CAATATCAAGAAGCGTATGATCAATATATGAAGACGGCCCAAAAGCTCAAACAGCTGTCTGAAAATGAGCAAGAGATGGT
ACACCGTTTAGACTTATTGCAATTTCAGCTGGAAGAGATTGAAGCGGCACAATTAGAGCCTGGGGAAGATGAGAAGCTTC
AAGAGGAACGTCATCAAATCAGCAATTTCGAAAAGATCTACTCCTCGCTGCAAAATGCATATAATGCCTTGCGCAATGAG
CAAGGAGGGCTTGATTGGGTTGGAATGGCCTCAAGCGAGCTTGAGCAAGTTTCTGACATCAATGAAGATTTAAAACAGCT
CTCTGAACAAGTCTCGAACTCCTATTACCTATTAGAGGATTCGACTTTTCAAATGCGCAGTATGCTCGATCAGTTAGAAT
TCGACCCAGCTCGTCTTGATTTTATTGAGTCCAGGCTAAATGAGATGAAACAGCTGAAGCGAAAATACGGCACAACGGTA
GAGGAAATTTTAGAGTATGCGGCTAAGATTGAAGAGGAAATAGATCAAATTCAACATCGAGACAGCCACCTGCAAACACT
CAAAGACAAGCTTGATGCGTTAAGCCGAGATGCATTGCTTGAAGCGCTTAACGTTTCTGAGCTTCGCAAAAAATGGGCAA
AAAAACTAGCGAAGCAAATTCAAGCTGAATTGAAGGATTTATATATGGAGAAATCGTCCTTTGATACGGCCTTTTCCGTT
CGATATGCGCCATTTGGCAGTACGGATTGCCCGCTTTTAGATGGAAAGCCCGTTCAGCTCGGGAGAAACGGAATAGATCA
AGCGCAATTTGTCATTTCTACTAATCCTGGCGAACCGATGAAGTCTTTGTCAAAAGTAGCATCTGGAGGAGAAATTTCAC
GTGTCATGCTGGCGGTGAAGAGTATTTTCTCCGCCAAACAAGAAGTGACATCCATTATCTTTGATGAAGTGGATACAGGC
GTCAGCGGCAGAGTCGCACAGGCGATTGCTGAAAAAATTTATAAAGTAGCGGCAGGCTCACAAGTCCTATGCATTACGCA
TCTGCCGCAAGTAGCAGCAATGGCTGACACTCACCTCTTCATTTCTAAACGCTCTAAAGCTGGCAGAACACTGACGAGTG
TCAAACCATTAAGTAATGAAGAAAAAGTGAGTGAAATTGGCCGGATGATTGCAGGCGTAGAAGTCACAGAGCTGACAAAA
CAGCATGCAAAAGAATTATTGCATCAAGCAAATGATGTCAAAACGACAGGGTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

76.256

100

0.763

Multiple sequence alignment