Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | GPA07_RS08530 | Genome accession | NZ_CP046653 |
| Coordinates | 1630822..1631157 (-) | Length | 111 a.a. |
| NCBI ID | WP_008360247.1 | Uniprot ID | - |
| Organism | Bacillus sp. ms-22 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1625822..1636157
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GPA07_RS08480 (GPA07_08480) | comGC | 1626024..1626317 (+) | 294 | WP_008360227.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| GPA07_RS08485 (GPA07_08485) | comGD | 1626310..1626756 (+) | 447 | WP_008360229.1 | competence type IV pilus minor pilin ComGD | - |
| GPA07_RS08490 (GPA07_08490) | comGE | 1626740..1627057 (+) | 318 | WP_008360231.1 | competence type IV pilus minor pilin ComGE | - |
| GPA07_RS08495 (GPA07_08495) | comGF | 1626966..1627496 (+) | 531 | WP_232532127.1 | competence type IV pilus minor pilin ComGF | - |
| GPA07_RS08500 (GPA07_08500) | comGG | 1627493..1627876 (+) | 384 | WP_008360235.1 | competence type IV pilus minor pilin ComGG | - |
| GPA07_RS08505 (GPA07_08505) | - | 1627937..1628125 (+) | 189 | WP_008360237.1 | YqzE family protein | - |
| GPA07_RS08510 (GPA07_08510) | - | 1628159..1628485 (-) | 327 | WP_008360239.1 | YqzG/YhdC family protein | - |
| GPA07_RS08515 (GPA07_08515) | tapA | 1628744..1629276 (+) | 533 | Protein_1653 | amyloid fiber anchoring/assembly protein TapA | - |
| GPA07_RS08520 (GPA07_08520) | - | 1629324..1629896 (+) | 573 | WP_008360243.1 | signal peptidase I | - |
| GPA07_RS08525 (GPA07_08525) | - | 1629954..1630754 (+) | 801 | WP_008360245.1 | TasA family protein | - |
| GPA07_RS08530 (GPA07_08530) | sinR | 1630822..1631157 (-) | 336 | WP_008360247.1 | helix-turn-helix domain-containing protein | Regulator |
| GPA07_RS08535 (GPA07_08535) | - | 1631191..1631355 (-) | 165 | WP_008360248.1 | anti-repressor SinI family protein | - |
| GPA07_RS08540 (GPA07_08540) | - | 1631540..1632337 (-) | 798 | WP_008360250.1 | YqhG family protein | - |
| GPA07_RS08545 (GPA07_08545) | - | 1632352..1634022 (-) | 1671 | WP_008360252.1 | SNF2-related protein | - |
| GPA07_RS08550 (GPA07_08550) | gcvT | 1634581..1635678 (+) | 1098 | WP_157292351.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12950.54 Da Isoelectric Point: 5.0026
>NTDB_id=406428 GPA07_RS08530 WP_008360247.1 1630822..1631157(-) (sinR) [Bacillus sp. ms-22]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQEEE
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQEEE
Nucleotide
Download Length: 336 bp
>NTDB_id=406428 GPA07_RS08530 WP_008360247.1 1630822..1631157(-) (sinR) [Bacillus sp. ms-22]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTAAACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
GCAAGAAGAGGAGTGA
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTAAACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
GCAAGAAGAGGAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
93.694 |
100 |
0.937 |